Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I18
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    56   5e-09
U13643-2|AAN65298.1|  354|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U13643-1|AAA21083.1|  427|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical ...    26   6.4  
AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical ...    26   6.4  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 25/28 (89%), Positives = 28/28 (100%)
 Frame = +3

Query: 54  MPREIKDIKDFLIKARRKDAKSVKIKKN 137
           MP+EIK+IKDFL+KARRKDAKSVKIKKN
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKN 28



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 27/58 (46%), Positives = 34/58 (58%)
 Frame = +1

Query: 79  KTF*LRRGGKTPNRSK*RRTL*NVKFKXSMLKXSXYTLVITDKEKAEKLKQSLPPGLQ 252
           K F ++   K     K ++   N KFK        YTLV+ DK+KAEKLKQSLPPG+Q
Sbjct: 9   KDFLVKARRKDAKSVKIKKNSNNTKFKVRCASY-LYTLVVADKDKAEKLKQSLPPGIQ 65


>U13643-2|AAN65298.1|  354|Caenorhabditis elegans Hypothetical
           protein T07E3.4b protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 58  RVKSKISKTF*LRRGGKTPNR-SK*RRTL*NVKFKXSMLKXSXYTLVITDKEKAEKLKQS 234
           +VK    ++  LRRG +  NR      TL NV+ + +  + +     + DKE AEKLK S
Sbjct: 277 KVKGSQFESECLRRGLRCKNRRGSGSLTLYNVQEENTKREFTIALAALEDKELAEKLKIS 336


>U13643-1|AAA21083.1|  427|Caenorhabditis elegans Hypothetical
           protein T07E3.4a protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 58  RVKSKISKTF*LRRGGKTPNR-SK*RRTL*NVKFKXSMLKXSXYTLVITDKEKAEKLKQS 234
           +VK    ++  LRRG +  NR      TL NV+ + +  + +     + DKE AEKLK S
Sbjct: 350 KVKGSQFESECLRRGLRCKNRRGSGSLTLYNVQEENTKREFTIALAALEDKELAEKLKIS 409


>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 48  FNMPR-EIKDIKDFLIKARRKDAKSVKIKKNPVECQVQ 158
           F++P  ++  I++FL+  + ++AK + I K  ++C V+
Sbjct: 225 FDVPASDVWSIEEFLVMEQWRNAKELTIIKRVIKCDVE 262


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 SXYTLVITDKEKAEKLKQSLPP 243
           S Y + IT K  AEKL + +PP
Sbjct: 297 SPYVMTITGKGPAEKLMKEVPP 318


>AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.2 protein.
          Length = 778

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
 Frame = +3

Query: 66  IKDIKDF-LIKAR---RKDAKSVKIKKNPVECQVQGFDAQ 173
           ++D K F LI A    RKDA +++IKKN ++C+ Q ++ Q
Sbjct: 86  LEDYKSFSLILASVYCRKDALNIQIKKN-LQCKKQEWEEQ 124


>AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.6 protein.
          Length = 778

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
 Frame = +3

Query: 66  IKDIKDF-LIKAR---RKDAKSVKIKKNPVECQVQGFDAQ 173
           ++D K F LI A    RKDA +++IKKN ++C+ Q ++ Q
Sbjct: 86  LEDYKSFSLILASVYCRKDALNIQIKKN-LQCKKQEWEEQ 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,335,102
Number of Sequences: 27780
Number of extensions: 76783
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)