Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_I17
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 89 7e-19
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 4e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.58
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.3
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.8
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 4.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.1
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 4.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 4.1
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 5.4
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 5.4
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 25 7.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.2
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 7.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 9.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 88.6 bits (210), Expect = 7e-19
Identities = 59/150 (39%), Positives = 83/150 (55%)
Frame = +3
Query: 180 EDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGW 359
E KE T E +E++ K + S DE E +++QVE+YF D NL DKFL + +DGW
Sbjct: 43 EKKEETTEK--KEDDGKKDLSFDEAE----VLKQVEFYFSDTNLPHDKFLWTTSQKNDGW 96
Query: 360 VPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRK 539
VP++ + F R+ + + + I NAL KS LLEV E +KVRR PL ++ K
Sbjct: 97 VPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEAGEKVRR--MIPLVRVD---NK 149
Query: 540 EICNRSIYAKGFAKDASLDDLLNYFKQFQE 629
+ RS+Y KGF D D + K F+E
Sbjct: 150 SVMERSVYCKGFG-DEKDDTQIALEKFFEE 178
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 279 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGL 458
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388
Query: 459 LEVSED 476
++V+ D
Sbjct: 389 IDVAID 394
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 207 NGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 353
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.58
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Frame = +3
Query: 294 FGDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSG 455
+ +N + KFL + K + L E+ TK +++L E D + L+ ++
Sbjct: 235 YSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTA 294
Query: 456 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 629
LL S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 295 LLIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 41 NTCFSXLKAISLKLSGLTLXYLNFEASINL 130
N C + + + LK GL + LNFEAS+ L
Sbjct: 1294 NECITRVYFLLLKACGLIMNGLNFEASVML 1323
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.8
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +3
Query: 234 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTED 413
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 414 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 587
+ V + T LL+++ D+ R + +NE E+ K+ N S+ K
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139
Query: 588 SLD 596
LD
Sbjct: 140 KLD 142
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 363 PLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSEDNKKVR 491
P+ I TK R A + + +A LN+ TSG+ L + N+ VR
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVR 662
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 477 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 593
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 162 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ- 338
R + +K ++ E ++++AK E+ + + E+ ++ ++ +F +L + Q+
Sbjct: 879 RNSEAENEKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTV 935
Query: 339 IKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 446
I + P +TKFN+ K+ T + A +S
Sbjct: 936 INAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 4.1
Identities = 27/117 (23%), Positives = 47/117 (40%)
Frame = +3
Query: 186 KEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVP 365
K + +N + K+E ++ E L ++ E V+L + Q KLD +
Sbjct: 607 KNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDEESKAVSQRKLD---LE 663
Query: 366 LEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELR 536
+I +LA TE+ + L L ++ + K V E P PE++ R
Sbjct: 664 YKINNSKTQLATATEEYHEHSKQLEAEKQELSKLEDGLKSVNLTEEAPKPEVDSTPR 720
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 174 MTEDKEVTVETNGQEENAKTENSEDE 251
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 352 SSNFICSCRNLSRC 311
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 495 NPEQPLPEMNEELRKEICN---RSIYAKGFAKDASLDDLLN 608
NPE P+P EEL + N +S + F+ LD ++N
Sbjct: 132 NPENPVPPSTEELANMLSNPMVQSSINEMFSNPQMLDMIIN 172
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +3
Query: 372 ILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICN 551
I+ K N + L D+I + SGLLE + VR + + + K IC
Sbjct: 242 IVRKSNSVYMLVTSKDIIRFVIPLMASGLLEAHKVQSIVRDSNPMFITLPLSAIAKHICQ 301
Query: 552 RSIYAKG 572
+ KG
Sbjct: 302 FLLRTKG 308
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 357 IRHLILFVLAEIYLDVDLHHQNNIRLA 277
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 495 NPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVI 644
+PE+ PE + N+ +Y + A ++ ++L+N K +E+++ I
Sbjct: 249 SPEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSAEELDSAI 298
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 394 RRLNFVRISNGTHPSSNFICSCRNLSRCRF 305
R N R+ + P+SN +C RN S+CRF
Sbjct: 352 RSSNRFRLFPASTPNSNGLC--RNDSKCRF 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,216
Number of Sequences: 5004
Number of extensions: 47432
Number of successful extensions: 177
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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