Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I13
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    29   0.43 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    29   0.43 
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.75 
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   3.0  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   7.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.0  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.2  

>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 266 SKNRRTKSKLSKNLERLFKEGKCRECSVVVTRMDFARILGKFTKVXIQFQSSSSTVKGKS 445
           +K    ++  + N +R+FK+G+     +V  ++DF R +G      I+  +S  T++   
Sbjct: 806 TKKMHFRAITTANGKRIFKDGRV----IVFQQLDFTRTVGVLLGTSIRTNASDCTLEVAY 861

Query: 446 TNP--NLK 463
            NP  NLK
Sbjct: 862 LNPQNNLK 869


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 8   VVSVQYLENLIVSWLLKITAYVYLQLFCAQMRYVTSCII 124
           V+   Y   LI S LL +  Y ++ L C    ++ +CI+
Sbjct: 707 VLGNNYFTTLIFSSLLILACYAFVSLICMDPFFIFTCIV 745


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 251 SKTILSKN-RRTKSKLSKNLERLFKEGKCRECSVVVTRMDF 370
           +KT+ + N R TK KLS+ LE     G+  +CS+  T +DF
Sbjct: 395 TKTVATSNLRSTKRKLSEILEN----GQSGDCSLTDTNVDF 431


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 335 RECSVVVTRMDFARILGKFTKVXIQFQSSSS 427
           ++C V + R+DF R+L K     + F +++S
Sbjct: 603 QKCHVYLYRLDFLRVLDKMFNDHVYFSTTNS 633


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 248 LSKTILSKNRRTKSKLSKNLERLFKEGKCRECSVVVTRMDFARIL 382
           LSK   +KN R + ++ KN+  L K+ +  E   V   +  ++++
Sbjct: 322 LSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVV 366


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 26  LENLIVSWLLKITAYVYLQLFCAQMRYVTSC--IIILVYFCELFTYNS 163
           + +L++ WLLK+   + + LF   +   +    + ++  FC L  + S
Sbjct: 98  MASLLIFWLLKVVTSLLILLFSPYIAITSMARLLTLITLFCSLVCFIS 145


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/28 (25%), Positives = 20/28 (71%)
 Frame = +2

Query: 53  LKITAYVYLQLFCAQMRYVTSCIIILVY 136
           +K+T+ + + +FC  +R++ + + IL++
Sbjct: 142 IKLTSGIQIGVFCISVRFLITHLTILIF 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,022
Number of Sequences: 5004
Number of extensions: 37856
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)