Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I09
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...   129   4e-31
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    57   2e-09
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    29   0.77 
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    27   2.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score =  129 bits (311), Expect = 4e-31
 Identities = 61/98 (62%), Positives = 82/98 (83%)
 Frame = +1

Query: 292 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 471
           AI KGN E ARI+A NAIR++ ++LN L++S+R+DAVSSR+QTA+T R V+ +MAGVV+ 
Sbjct: 17  AITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRG 76

Query: 472 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAM 585
           MD AMK+MNLE IS +MDKFE+QF+D++VQ+ YM  AM
Sbjct: 77  MDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAM 114


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 32/141 (22%), Positives = 63/141 (44%)
 Frame = +1

Query: 163 GNEMSSSAMEKHLFNLKFAVKELERNSXXXXXXXXXXXXXXXXAIQKGNMEGARIHAENA 342
           G +     +  H  +L  A +EL+R                  + + GN   ARI A + 
Sbjct: 10  GGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDL 69

Query: 343 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLM 522
           +R +N     +    ++ A+S R+QT  T+ ++  SM G  + +    KSMN+  ++ + 
Sbjct: 70  MRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARIT 129

Query: 523 DKFESQFEDLDVQSSYMENAM 585
            +FE + E ++ +   ++  M
Sbjct: 130 QQFERENEIMEQRQEMIDENM 150


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 436 KVTNSMAGVVKAMDAAM-KSMNLEKISTLMDKFESQFE 546
           ++ NS   V K +DA+   S+NLEK+S L D+ + +F+
Sbjct: 250 QLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFD 287


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +1

Query: 331 AENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGV------VKAMDAAMKS 492
           A N +RQK    + L+   +     +  Q A+TT  + N+MA V       + + +  K+
Sbjct: 65  AMNVLRQKKIYESQLQQLQQQSF--NMEQAAMTTESLKNTMATVQTMQETARQLKSQSKN 122

Query: 493 MNLEKISTLMDKFESQFE 546
           +++EKI  L D+ +   +
Sbjct: 123 VSIEKIEKLQDEIQDYMD 140


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +1

Query: 298  QKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMD 477
            Q+  +  ARI  E  +R  N  LN+ ++ A    + S ++ +L +  V + M  V  A  
Sbjct: 1820 QRDIVSAARISCEMLLRVINDLLNFSKLEAGKVTLESDLEFSLES-VVCDCMQSVYSA-- 1876

Query: 478  AAMKSMNL 501
             A K +NL
Sbjct: 1877 CAEKGINL 1884


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 472 MDAAMKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMS 588
           +  A+     EK   +   +ES F++ DVQ  YM +  S
Sbjct: 771 LSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRS 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,914
Number of Sequences: 5004
Number of extensions: 36548
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)