Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I06
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    29   0.37 
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    29   0.37 
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    29   0.37 
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    29   0.48 
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    29   0.48 
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    27   2.0  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   4.5  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   7.9  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   7.9  

>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 149 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWLRKAVIKIWRFDCLRETG-HCGRTQ 325
           + T +Q   ++ FN + +  +  F +YS N+  +W  + +  IW+   + ETG +C   +
Sbjct: 8   RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65

Query: 326 PSQTD 340
           P   D
Sbjct: 66  PMTMD 70


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 149 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWLRKAVIKIWRFDCLRETG-HCGRTQ 325
           + T +Q   ++ FN + +  +  F +YS N+  +W  + +  IW+   + ETG +C   +
Sbjct: 8   RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65

Query: 326 PSQTD 340
           P   D
Sbjct: 66  PMTMD 70


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 149 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWLRKAVIKIWRFDCLRETG-HCGRTQ 325
           + T +Q   ++ FN + +  +  F +YS N+  +W  + +  IW+   + ETG +C   +
Sbjct: 8   RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65

Query: 326 PSQTD 340
           P   D
Sbjct: 66  PMTMD 70


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 224 SYSRNNRRLWLRKAVIKIWRFDCLRETG-HCGRTQPSQTD 340
           +YS N+  +W  + +  IW+   + ETG +C   +P   D
Sbjct: 3   AYSGNSESVWTGENITSIWKTILINETGSYCVAARPMTMD 42


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 348 LGQITKQPPAANMMEMIWDDELAATA 425
           +GQIT++  A    EMIWD ++A +A
Sbjct: 410 IGQITEKDVARVASEMIWDKDIAVSA 435


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  ITSENILYSSYESQLKRENQLKFRVLCINFLIKMIPLV 209
           I  E +  + Y SQL   NQ  F  L    LI+MIP++
Sbjct: 65  IGDEPLQKNLYLSQLSVTNQTLFYALISQHLIEMIPII 102


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 218 FGSYSRNNRRLWLRKAVIKIWR--FDCLRETGH 310
           F +    N+R W  +  IKI+R  FD  R T H
Sbjct: 9   FDAIRHANQRRWCHECTIKIFRRSFDIARHTVH 41


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 429 RWSDQCIPAHDRAAQRDL 482
           RW D+CI AH R   ++L
Sbjct: 173 RWLDRCIQAHKRPETQNL 190


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -1

Query: 530 TSCPSGCEVLSNRESAQITLGSAVVSG-YTLIGPALSSSCQFIVPNHFHHVSCWGLFGNL 354
           T+ P    +  N   A++     + SG ++ I P  +SS   I  + FH V+C+    + 
Sbjct: 182 TAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAPYKNSSSSVIPDSSFHSVACYRASSHY 241

Query: 353 SESN-SLSETVVCVHNGLFLVSSQT 282
            E+    S  +  + N L L+   +
Sbjct: 242 KEAPVEKSIDIDIIQNNLSLLEEDS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,630
Number of Sequences: 5004
Number of extensions: 46556
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)