Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_I06
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336... 31 0.49
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 31 0.49
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823... 30 1.1
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 30 1.5
05_07_0343 - 29404816-29405412 29 2.0
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 29 2.6
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 4.6
11_06_0514 - 24477720-24479915 27 8.0
07_01_0203 + 1469575-1470045 27 8.0
07_01_0199 - 1420982-1421452 27 8.0
07_01_0195 - 1387831-1388301 27 8.0
07_01_0191 - 1354678-1355148 27 8.0
07_01_0187 - 1321525-1321995 27 8.0
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 27 8.0
>08_02_0684 +
20031661-20031957,20032094-20032512,20033600-20033606,
20033905-20033982,20034086-20034121
Length = 278
Score = 31.5 bits (68), Expect = 0.49
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = -2
Query: 388 IMLAAGGCLVICPRATVCLRRLCASTMACFS*AVKPPDFNNCFPEPQPSVVARIAPKTNN 209
+ LA G C +I P A + LRRL +A F +V C PQ S + P N
Sbjct: 198 LWLAVGHCCLIIPYAVLRLRRLARKKVASFFVSVP------CMVHPQSSQIGFANPADN- 250
Query: 208 TKGIILIKKFIHNTLNL 158
+ K++H+ L L
Sbjct: 251 -----YVAKYVHHVLVL 262
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 436 DQR*AVAANSSSQIISIMLAAGGCLVICPRATVCLRRLC 320
DQR II ++L A CL ICP++ ++++C
Sbjct: 795 DQRIMAPTTEEKDIILLVLVAFACLQICPKSRPTMQQVC 833
>03_06_0763 +
36081546-36081669,36081755-36082170,36082280-36082339,
36082466-36083101
Length = 411
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 103 LVIYETSNFFYYLNLPGDP--LHYV-LRAHQVTAFC 5
+ IY T ++YYL+LP LHY+ +R +T FC
Sbjct: 138 ICIYSTLLYYYYLHLPNSNHLLHYLQVRLEALTDFC 173
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -1
Query: 503 LSNRESAQITLGSAVVSGYTLIGPALSSSCQFIVPNHFHHVSCWGLFGNLSESNSLSETV 324
L+ +E +I +A G T AL + I N F+ GL GN+ ++ T+
Sbjct: 332 LAPQEKERIVDMAAAPGGKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRM-GVTNTI 390
Query: 323 VCVHNG 306
VC ++G
Sbjct: 391 VCNYDG 396
>05_07_0343 - 29404816-29405412
Length = 198
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 312 VDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSD 440
VD HN+LR L QP M WD++LA A+RWSD
Sbjct: 60 VDGHNQLRARYGL-----QP-------MRWDNKLARQARRWSD 90
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 300 KQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSDQCIP 452
K+A D N L+ + L I +++ +WDD L Q W C+P
Sbjct: 283 KEATTDNLNCLQ--LGLSNIVNNKRFLIILDDVWDDALKENGQCWERLCLP 331
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 431 ALSSSCQFIVPNHFHHVSCWGLFGNLSESNSLSETVV 321
A S C FI+ N H++SC N+ S E VV
Sbjct: 457 ASSKFCAFIILNGMHNISCEVTIQNMESDLSRMEKVV 493
>11_06_0514 - 24477720-24479915
Length = 731
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 370 GCLVICPRATVCLRRLCASTMA 305
GC + C ++ CLR LC S+ A
Sbjct: 522 GCCISCSSSSKCLRCLCVSSSA 543
>07_01_0203 + 1469575-1470045
Length = 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 512
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0199 - 1420982-1421452
Length = 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 512
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0195 - 1387831-1388301
Length = 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 512
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0191 - 1354678-1355148
Length = 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 512
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>07_01_0187 - 1321525-1321995
Length = 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 AANMMEMIWDDELAATAQRWSDQCIPAHDRAAQR-DLGRFPVGQNLA 512
A + + WDD LAA AQ +++Q A D A + D + G+NL+
Sbjct: 30 AVGVPALSWDDNLAAYAQGYANQ--RAGDCALRHSDRNNYQYGENLS 74
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 412 WQLLLNAGPINVYPLTTALPNVIWADS 492
WQ L +GPI + P+ N++W S
Sbjct: 299 WQRFLPSGPIALLPIGDNYSNIVWTMS 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,564
Number of Sequences: 37544
Number of extensions: 318199
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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