Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I05
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    32   0.079
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   9.1  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   9.1  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 397 STRWPTNYWTRVLVPLGDRQTSYHTVLASFHLESASLLCP 516
           + +W  NYW   LVP GD   S H +    HL   +++ P
Sbjct: 795 AVKWQHNYWKGKLVP-GDVLLSNHPIAGGVHLPDLTVVTP 833


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 294 TGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSP 455
           T + RAT S NY++ +A  S L   + AS   ++  ++A    +   ST   SP
Sbjct: 54  TLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTN---STTSASP 104


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 437 YPWAIAKLLTTLCSQVSIWKVP 502
           Y W  A LLT+ C +++  K P
Sbjct: 225 YIWRFAALLTSCCRRIAYTKTP 246


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 MLSSASNVVGKLALTELPFPL 324
           +L S  NV+ K AL +LP+PL
Sbjct: 19  VLLSQGNVLKKTALFQLPYPL 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,926
Number of Sequences: 5004
Number of extensions: 54786
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)