Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_I05
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716... 34 0.082
01_01_0023 + 177642-179462 30 1.3
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 29 4.1
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 28 5.4
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449... 28 5.4
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 28 5.4
12_01_0654 - 5542349-5542480,5542491-5542666,5542835-5542937,554... 28 7.1
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 28 7.1
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 27 9.4
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 9.4
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 27 9.4
>09_02_0312 -
7168332-7168408,7168492-7168621,7168793-7168861,
7168947-7169066,7169356-7169440,7169565-7169650,
7169762-7169914,7170008-7170130,7170974-7171357
Length = 408
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 211 GSRRETLIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAVQ 342
G +TL +G L WY+ + N+ K L P+P+ +T VQ
Sbjct: 100 GGLAKTLQLGALFGLWYLFNIYFNIYNKQVLKVFPYPINITNVQ 143
>01_01_0023 + 177642-179462
Length = 606
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 492 GKCQSPMPTQVCLLYSCXHYTDGKLIFLHYRPSASTFGS 608
GKCQ P P Q+ LY+ + T L RP S+FG+
Sbjct: 172 GKCQQPHPWQMAYLYAALYTT--ALGAAGIRPCVSSFGA 208
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 229 LIVGFLCAAWYMLSSASNVVGKLALTELPFPLTMTAV 339
LI GF WY L+ N++ K P+P ++ +
Sbjct: 114 LITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVI 150
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 401 VERTPHRASAGTLSEAAAHSCTAVIVSGNGSSVNASLPTTLLAELNIYHAAHRKPTISVS 222
+E TP R S+G + A+ + A GSS+ SL + HR + S
Sbjct: 281 IELTPERRSSGVKRQLASGTSLAKKPRSQGSSITCSLCKVTMTSPRAL-VEHRASLLHRS 339
Query: 221 RLEPL 207
L PL
Sbjct: 340 NLAPL 344
>08_02_1420 +
26942777-26942905,26944415-26944511,26944596-26944962,
26945286-26945793
Length = 366
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 454 QTSYHTVLASFHLESASLLCPH 519
QTSYHTV + S+SL+CP+
Sbjct: 73 QTSYHTVGDHSNAASSSLVCPY 94
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 217 RRETLIVGFLCAAWYMLSSASNVVGKLALTELPFP 321
R L+ GF WY L+ N++ K P+P
Sbjct: 96 RYPALVTGFFFFMWYFLNVIFNILNKKIFDYFPYP 130
>12_01_0654 -
5542349-5542480,5542491-5542666,5542835-5542937,
5542971-5543084,5543104-5543163,5543258-5544316
Length = 547
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 312 TISTNYDSGTAVCSGLAECTRASPVWSTFDAMADEL 419
++STN+++ T + + T + P + T+DA+ + L
Sbjct: 262 SVSTNFNAETLISKIIQSVTLSKPSFDTYDALQEHL 297
>01_07_0359 - 43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 308 SVNASLPTTLLAELNIYHAAHRKPTISVSRLEPLVPIALFFY 183
SVN + TTLL+E ++ R I+ +L VP +LFF+
Sbjct: 1014 SVNQTAQTTLLSETSMAALLLRGLAIAPMQLVARVPTSLFFW 1055
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 395 RTPHRASAGTLSEAAAHSCTAVIVSGNGSSVNASL-PTTLLAE 270
R PH SA S A + + GNG +VN S+ PT +L++
Sbjct: 453 RAPHSQSAVLKSYAGDYRGSCTTNGGNGITVNKSVGPTRVLSD 495
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -3
Query: 401 VERTPHRASAGTLSE---AAAHSCTAVIVSGNGSSVNASLPTTL--LAELNIYH 255
++ TP + SAG AAA CTA+ S + S V LP+ + LA+ + +H
Sbjct: 196 MQPTPPQHSAGPPPPPPPAAAGMCTALAASSSNSGVEDPLPSYMEALADFSDFH 249
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 324 NYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCL 434
NY+SG AV L + + S STFD A + D L
Sbjct: 500 NYNSGNAVAYALLDGNKQSAFLSTFDKSAFKSSDKLL 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,025
Number of Sequences: 37544
Number of extensions: 352521
Number of successful extensions: 973
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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