Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I05
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   1.6  
L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   2.1  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   2.1  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   2.1  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   4.8  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 399 DAMADELLDPCLSTLGRSPNFLPHCARKFPFGKCQSPMPTQVCLLYSCXHYTDGKL 566
           D+    +++  LS L     F PHCA      KC +P+   + ++Y    + D K+
Sbjct: 768 DSFQPYMIESVLSKLPPKCGFSPHCANYLVLKKCATPLAFPLSIIYK-QSFADSKI 822


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
 Frame = -1

Query: 274 LNLTYTTLRTGSQLLVSR-AWSRLYPLRFF-FIRKYSKAKFLSQNXLKIFNSIIHYYSVQ 101
           L+    TL T S L+++   W+ L P++FF F+ + + + F+      +FN     +SV 
Sbjct: 50  LSTVTATLLTASFLIMAVFLWNHLKPMKFFWFLLQLTISAFILSTLNLVFNVPATLFSVA 109

Query: 100 YTR*FCVTYTFLVIRLAYIIXVM*HG---NNFI 11
            T  F  T  +L+  ++Y+I    H    +NF+
Sbjct: 110 -TEQFVQTNLYLI--MSYVIDFCLHSILFSNFV 139


>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 280 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 197
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical
           protein F44B9.9 protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 617 LKIASKGGC*RSIMKEYEFSVSVMXTTVQQTNLCGHRRLALSK 489
           +K+AS G    SIMK   F++ +    ++  N   HR + LSK
Sbjct: 195 MKVASNGKISISIMKNPNFAMKMFLLQMKSHNSLDHRNMRLSK 237


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 282 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 461
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 462 LPHCA---RKFPFGKCQS 506
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 282 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 461
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 462 LPHCA---RKFPFGKCQS 506
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 282 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 461
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 462 LPHCA---RKFPFGKCQS 506
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 416 FVGHRVERTPHRASAGTLSEAAAHSC 339
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,360
Number of Sequences: 27780
Number of extensions: 312922
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)