Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_I03
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 52 3e-08
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 52 3e-08
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11... 27 1.5
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 2.0
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 25 3.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.5
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 4.6
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 24 8.0
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 8.0
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 52.4 bits (120), Expect = 3e-08
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 217 LRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCY 357
+ + P + ++ GIW+RY+SRSG HNMY+E+R + GAV Y
Sbjct: 60 INEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMY 106
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 141 VAKSRFWYFLRQLKKFKKTTGEIV 212
VAKSR+WYFL+ + K KK TGEIV
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIV 58
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 52.4 bits (120), Expect = 3e-08
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 217 LRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCY 357
+ + P + ++ GIW+RY+SRSG HNMY+E+R + GAV Y
Sbjct: 60 INEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMY 106
Score = 42.3 bits (95), Expect = 3e-05
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3
Query: 141 VAKSRFWYFLRQLKKFKKTTGEIV 212
VAKSR+WYFL+ + K KK TGEIV
Sbjct: 35 VAKSRYWYFLKMINKVKKATGEIV 58
>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 1.5
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 298 VHLNETHSVARYPKFLILMGLFSGISLIETI----SPVVFLNFLSCLRKYQKRDLATIGS 131
V+L ETH A+ K L + LF G I T+ SP F+S L+ YQ + + +G
Sbjct: 98 VNLIETHKKAQKIK-LDIDNLFVGPLAIFTLGPKLSPEAIRGFMSVLKGYQNK-ILLLGI 155
Query: 130 RREN 119
R E+
Sbjct: 156 RAES 159
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 2.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 129 RDPIVAKSRFWYFLRQLKKFK 191
+D ++ RFWY+L + K F+
Sbjct: 475 KDRLIVTFRFWYYLMKAKSFQ 495
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 3.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 133 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 258
+ + PN +S IS N R + R LVK L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 145 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK 237
P++V S D+ + SRRP + S RKF K
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPK 332
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 25.0 bits (52), Expect = 4.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 133 IQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLRI 258
+ + PN +S IS N R + R L+K L+ + SR RI
Sbjct: 22 VWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 8.0
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -3
Query: 262 PKFLILMGLFSGISLIET-ISPVVFLNFLSCLR-KYQKRDLATIGSRRENSHFIXREVWA 89
P L++ ++G++ I+T + ++ L + K +A +G + E + V
Sbjct: 29 PNGLVIKNAYAGLNYIDTYLRTGLYTAPLPYIPGKEAAGVVAAVGDKVEADFKVGDRVVY 88
Query: 88 RSPTGAYGR*PHIPSTVL 35
+P GAY + ++P+T++
Sbjct: 89 LTPFGAYAQYTNVPTTLV 106
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 194 LLELLKLSQEIPETRFGDNWIPERKFSFYXKGGLGSFS 81
+ EL K+ ++ P+ R+G + PERKF Y + + ++
Sbjct: 754 MYELAKIYEQ-PD-RYGVSATPERKFELYKQSAVYGYA 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,731
Number of Sequences: 5004
Number of extensions: 27946
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -