Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I03
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...    57   5e-09
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    57   6e-09
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    57   6e-09
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366...    27   5.8  
02_01_0221 + 1447305-1447435,1448693-1449140                           27   5.8  

>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 24/65 (36%), Positives = 40/65 (61%)
 Frame = +1

Query: 178 LRSSRRPLVKLSLLRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCY 357
           L+  ++   ++  + +   K P+ ++  GIWLRY+SR+G HNMY+EYR  ++ GAV   Y
Sbjct: 50  LKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY 109

Query: 358 KKFGS 372
            +  S
Sbjct: 110 TEMAS 114



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 144 AKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFG 263
           AKS+FWYFLR+LKK KK+ G+I+              N+G
Sbjct: 39  AKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYG 78


>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 208 LSLLRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCYKKFGS 372
           L++   F+R  P+ ++  GIWLRY+SR+G HNMY+EYR  ++ GAV   Y +  S
Sbjct: 61  LAINEIFERN-PTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAS 114



 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 144 AKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFG 263
           AKS+FWYFLR+LKK KK+ G+++              N+G
Sbjct: 39  AKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYG 78


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 208 LSLLRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCYKKFGS 372
           L++   F+R  P+ ++  GIWLRY+SR+G HNMY+EYR  ++ GAV   Y +  S
Sbjct: 78  LAINEIFERN-PTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAS 131



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFG 263
           YFLR+LKK KK+ G+++              N+G
Sbjct: 62  YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYG 95


>05_04_0274 -
           19636163-19636280,19636359-19636423,19636485-19636637,
           19636738-19637043,19637137-19637314,19637452-19637687,
           19637835-19638032,19638171-19638293,19638729-19639013,
           19639186-19639326,19639799-19640188,19640465-19640647,
           19640934-19641020
          Length = 820

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
 Frame = -1

Query: 153 EIW----RQLDPGEKILILXQG 100
           E+W    +QLDPGEKI +L  G
Sbjct: 566 EVWQSVRKQLDPGEKITVLTNG 587


>02_01_0221 + 1447305-1447435,1448693-1449140
          Length = 192

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 47  GNMRLSAVSSRRRTSPNLPXYKMRI-FSPGSNCRQISFLVFPETT 178
           G +  S ++ R ++ P LP        S  S CR+IS+  FP  T
Sbjct: 128 GKVLFSPLNIRPKSFPVLPTMMQPTRISASSQCRRISYSSFPSAT 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,633,297
Number of Sequences: 37544
Number of extensions: 175100
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)