Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I03
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    66   1e-11
Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    27   7.0  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    27   7.0  
U21322-4|AAA62540.2|  508|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   7.0  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   7.0  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 28/55 (50%), Positives = 40/55 (72%)
 Frame = +1

Query: 208 LSLLRKFQRKAPSRLRILGIWLRYESRSGVHNMYREYRXLSVGGAVTXCYKKFGS 372
           LS+ + F+ K P  ++  G+WL+Y+SR+G HNMYREYR  +V GAVT CY+  G+
Sbjct: 65  LSIKQVFE-KNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGA 118



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 138 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFG 263
           ++AKSRFWYF+  L++ KK  GEI+              N+G
Sbjct: 41  VIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYG 82


>Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical
           protein C28D4.7 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 269 QIPKILNLDGAFLWNFLNRDN-FTSGLLELLKLSQEIPETRFGDN 138
           Q+P  LNLDG FL N     N +   LL LL+  +   +  + +N
Sbjct: 188 QVPDDLNLDGIFLKNATEAPNMYIVKLLNLLRDPEGFGKVAYDNN 232


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 230 WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIPERKFSFYXKG 99
           W+F  RDNF   +  E  KL+ E  +   G  +  E  F FY  G
Sbjct: 733 WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 775


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding la
            related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 230  WNFLNRDNFTSGLL-ELLKLSQEIPETRFGDNWIPERKFSFYXKG 99
            W+F  RDNF   +  E  KL+ E  +   G  +  E  F FY  G
Sbjct: 930  WSFFLRDNFNRNMYEEFRKLALE--DAEIGSRYGIEALFRFYSYG 972


>U21322-4|AAA62540.2|  508|Caenorhabditis elegans Hypothetical
           protein K10D2.2 protein.
          Length = 508

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 214 LLRKFQRKAPSRLRILGIWLR-YESRSGV 297
           LL+++ +  P RL  LG+W++ +  RSGV
Sbjct: 259 LLQQYCKWDPERLPTLGVWVKAWAKRSGV 287


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 7   QIKTP-KMKAKGQLREYEVIG 66
           Q+KTP     +GQLREY+++G
Sbjct: 545 QVKTPVPFLIRGQLREYQMVG 565


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 7   QIKTP-KMKAKGQLREYEVIG 66
           Q+KTP     +GQLREY+++G
Sbjct: 545 QVKTPVPFLIRGQLREYQMVG 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,309,428
Number of Sequences: 27780
Number of extensions: 151126
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)