Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H24
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 34 0.083
02_04_0605 - 24290777-24290830,24290914-24291075,24291494-242916... 31 1.0
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 30 1.4
03_05_0625 - 26225201-26225879,26226706-26227553 29 2.4
08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802 29 4.1
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204... 28 5.5
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 28 5.5
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549... 28 7.2
06_03_0588 + 22567820-22570802,22570917-22571269 28 7.2
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 27 9.6
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 27 9.6
05_06_0243 - 26639497-26641173 27 9.6
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 34.3 bits (75), Expect = 0.083
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = -3
Query: 641 SFTRITHLQTLIVF-RVKDFEIDSVRFPRGHKLPTVLMVVLVAICVSITI---LV*ILAQ 474
+F ++HLQ+L F RVK S RFP +P V ++ VA CV +T+ I+ +
Sbjct: 392 AFATVSHLQSLSCFPRVKILH-TSKRFPGQLYIPGVNFLLCVAACV-VTVSFKTTVIIGK 449
Query: 473 SHVQIVMLVNNFTVLLI 423
+H V+LV T LL+
Sbjct: 450 AHEICVILVMIITTLLM 466
>02_04_0605 -
24290777-24290830,24290914-24291075,24291494-24291694,
24291777-24291961,24292117-24292246
Length = 243
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 638 FTRITHLQTLIVFRVKDFEIDSVRFPRGHKLPTVLMVVLVAICVSITILV 489
F +I L + V + + D VR+ R KL VL++V VA+C + V
Sbjct: 103 FYQIAKLCIIPVLCILEILFDKVRYSRNTKLSIVLVLVGVAVCTVTDVSV 152
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -3
Query: 620 LQTLIVFRVKDFEID-SVRFPRGHKLPTVLMVVLV 519
LQ LIVF V+ E+D ++ FP H L VL V++V
Sbjct: 215 LQVLIVFCVESLELDFALLFPERHTLLRVLPVLVV 249
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +3
Query: 357 WTTGHQNIVQSCFPLEFR----LILD-DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGD 521
W H+N + S FP + R L+ D DKKD K D + D + D D G+
Sbjct: 341 WVPKHENNLDSVFPRQTRRRWMLLQDLDKKDSTTFRKEHDEEIDFEWSSDGDDDSDHRGN 400
Query: 522 EDDHK 536
+++
Sbjct: 401 VPEYR 405
>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
Length = 914
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 135 VIIATFFNMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGS 281
++ +T N +V + +SDRK +S+D + C S+P+GS
Sbjct: 643 MMASTNVNRTVYGDQAEQSDRKTCQRELSSDLIRLSVECSSSSSQPHGS 691
>08_02_1465 -
27319377-27319405,27319936-27320101,27320336-27320444,
27320865-27321448
Length = 295
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 450 KHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 542
KH DLY+ S+ RD+Y D+DDH S
Sbjct: 219 KHPDLYLGKSEK-----GRDSYDDDDDHHES 244
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 267 EPNGSYIIKNTVTELLNN--AESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCK 440
+ + +KN +T+ + A I +++L T +E I++D +
Sbjct: 471 DAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTI---QAADRIIVMENGNIVEDGNHSE 527
Query: 441 IINKHDDLYMTLSK 482
+INKHD LY L++
Sbjct: 528 LINKHDGLYSRLAR 541
>07_03_0149 -
14452654-14452666,14452943-14454699,14454886-14454990,
14455808-14455978,14456309-14456641,14456900-14457492,
14458864-14458906
Length = 1004
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 126 TLSVIIATFFNMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPN 275
T + +I T + +++ K V+ +D +D +RCEQL SE N
Sbjct: 82 TANSLITTRMDANMDTPLEQKQKDSSAIIVLDSDDEDEAERCEQLASENN 131
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 557 GHKLPTVLMVVLVAICVSITILV*ILAQSHVQIVMLVNN 441
GH LP + ++L+ S +I V +L SH+Q + L NN
Sbjct: 362 GHMLPNIQELILLNNKFSGSIPVSLLNASHLQKLSLANN 400
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +3
Query: 408 RLILDDKKDCKIINKHDDLYMTLS------KDLDQNGDRDAYGDEDDHKNSWKF 551
RL++DD +D K +++ D+ + L K ++Q+ + Y ++ ++ W F
Sbjct: 478 RLVVDDNEDIKKLDRELDIEVILQWRMLAHKFVEQSAETHQYAQQNKQQSWWSF 531
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 459 DLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYF 584
D ++ LSKD D N + + D D++ N+ S+ +N +YF
Sbjct: 173 DSWLLLSKDSDNNNNNNNNNDNDNNDNN---NSNSSNNGMYF 211
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 201 LYNSVISADYDDATKRCEQLQ 263
L NSV A Y+D K C QLQ
Sbjct: 272 LRNSVAKASYEDVFKSCPQLQ 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,148
Number of Sequences: 37544
Number of extensions: 308610
Number of successful extensions: 742
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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