Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H17
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    80   2e-16
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    79   4e-16
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    28   0.55 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   3.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   3.9  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    24   9.0  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 38/57 (66%), Positives = 44/57 (77%)
 Frame = +3

Query: 45  APKMVAAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
           AP    +K  KK  ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPP
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPP 64



 Score = 77.8 bits (183), Expect = 7e-16
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +1

Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 369
           E+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 69  ELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 78.6 bits (185), Expect = 4e-16
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +1

Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 369
           E+EYYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 61  ELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107



 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 35/53 (66%), Positives = 41/53 (77%)
 Frame = +3

Query: 57  VAAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
           V  K  KK  ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PP
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPP 56


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 72  QKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 194
           +KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 280 EKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 42  YAPKMVAAKXQKKPIESINSRLALVMKSG---KYCL-GYKQTLKTLRQGKAKLVIIAKNA 209
           Y P ++       P + +N ++   +K     K+ L G K+ +K +R+G+  LVI+A + 
Sbjct: 21  YLPALMPIAKPLAP-KKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDI 79

Query: 210 PP 215
            P
Sbjct: 80  SP 81


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 25  AXSLAFTLPKWLQQXNRKSPSSQLTPAL 108
           A  L ++L +WL   N K PS+Q +  L
Sbjct: 126 AKELGYSLIEWLNPMNLKEPSNQESDTL 153


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 68  LCCNHFGSVNANEXAPRAQMEK 3
           + C+H  S+NAN  A RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,494
Number of Sequences: 5004
Number of extensions: 29451
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)