Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H17
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 93 1e-19
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 91 5e-19
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 89 1e-18
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70... 31 0.54
03_05_0830 + 28034179-28035492 29 1.7
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 5.1
07_03_1085 - 23851852-23853165 27 6.7
06_03_0315 + 19486006-19486250,19486346-19487281,19488823-194890... 27 8.8
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 8.8
04_03_0910 + 20751014-20753437 27 8.8
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 92.7 bits (220), Expect = 1e-19
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +1
Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 381
EIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 100 EIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/53 (62%), Positives = 39/53 (73%)
Frame = +3
Query: 57 VAAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
V A QKK ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PP
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPP 95
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 90.6 bits (215), Expect = 5e-19
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +1
Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 387
EIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 177 EIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +3
Query: 75 KKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PP
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPP 172
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 89.0 bits (211), Expect = 1e-18
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +1
Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 375
EIEYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 59 EIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
Score = 75.8 bits (178), Expect = 1e-14
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +3
Query: 54 MVAAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
MVAAK KK ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PP
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPP 54
>08_01_0098 -
700443-700660,701112-701268,701586-701678,701763-702149,
702755-702829,703486-703609,703693-703832,703904-703993,
704254-704298,704917-705042,705138-705272,705966-706451,
706539-706596,706728-706855,707209-707463
Length = 838
Score = 30.7 bits (66), Expect = 0.54
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 158 ENSSTRQSKAGYHR*KCSSA*GNLRLNTTPS*LRQVFTTTAGTT 289
EN+++++SK+ ++ KC++ N+ L +R+ F+ G T
Sbjct: 657 ENTASKESKSNFYSDKCTAYMSNIDLTANEEHIRRFFSDIGGVT 700
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 123 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 206
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 57 VAAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 212
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 123 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 206
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>06_03_0315 +
19486006-19486250,19486346-19487281,19488823-19489019,
19489044-19489246
Length = 526
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 135 CLGYKQTLKTLRQGKAKL--VIIAKNAPPPKEI*D*ILRP 248
CLG+ L TLR G + L +I+ +A PP I +L P
Sbjct: 471 CLGFSYGLATLRVGSSPLLMLILEGHASPPLGIGSPLLPP 510
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 105 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPP 215
L LV ++ + CL G K+ +K++R+G+ L IIA N P
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISP 72
>04_03_0910 + 20751014-20753437
Length = 807
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 36 SIYAPKMVAAKXQKKPIESINSRLALVMKSGKYCLGYKQT 155
S++ P + AA P +SI LV +GK+ LG+ T
Sbjct: 14 SLHLPAISAAADTLSPGQSIAGDDRLVSSNGKFALGFFNT 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,191,432
Number of Sequences: 37544
Number of extensions: 211745
Number of successful extensions: 451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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