Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H17
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    99   1e-21
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.21 
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    28   3.5  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   6.0  
AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 42/54 (77%), Positives = 49/54 (90%)
 Frame = +1

Query: 229 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAS 390
           EIEYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P  S
Sbjct: 59  EIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVPSES 112



 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +3

Query: 60  AAKXQKKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 215
           AAK QK   E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PP
Sbjct: 4   AAKPQKNA-ENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPP 54


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 111 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 206
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 114 VMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPPKE 224
           V ++ K   G K     L++ KAKL++  K A  PK+
Sbjct: 100 VRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKK 136


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 238 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 363
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


>AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical
           protein T05A8.6 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 239 TTPS*LRQVFTTTAGTTLN*EQHAENTTECAHSPSQTLVTRTLSPLC 379
           T P  ++ V TTT G T      A  TT+     + T  T T +P C
Sbjct: 63  TKPVRVKPVLTTTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDC 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,344,703
Number of Sequences: 27780
Number of extensions: 178157
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)