Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H12
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   2.8  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    25   6.5  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   8.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 348 YFAEFARTQSRPGAVPAPVREWMDLTE 428
           YF +  R QS P  +P PV   + LT+
Sbjct: 291 YFPQHRRFQSAPAPIPRPVSTLIPLTQ 317


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 451 DLGSISTASVRSIHSRTGAGTAPGRDCVLANSAKY 347
           DL  I+ + + ++ S T    A   +CVL+N  KY
Sbjct: 415 DLSDIADSILLNMFSPTSKNRATNINCVLSNLGKY 449


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 208 RRRANKGFRGAGRVDSGRTEESTAPASTLGFGQ 306
           R  A+ G+R A + D G      AP+   GFG+
Sbjct: 110 RASADAGYRRAEKKDEGAAPSGFAPSFRGGFGR 142


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 NSWIWTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMD 419
           N W + +  +  ++++    +  E+    SRP  +   VREW+D
Sbjct: 168 NPWFFGSEDDYTRMLE-EAGFHVEYVENISRPTLLNKDVREWLD 210


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 270  VDGPRLNSWIWTNAIEKMQIIDGHYKYFAE 359
            +D P + S++  N+ + M+I D  ++Y+A+
Sbjct: 977  IDSPYIQSYLERNSTKDMKIADLLWQYYAK 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,161
Number of Sequences: 5004
Number of extensions: 49696
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)