Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H12
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278 33 0.24
11_06_0159 - 20780613-20781126,20781377-20781426 32 0.41
01_05_0045 + 17535929-17536249,17536255-17536520,17537169-175377... 31 0.54
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 31 0.72
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 31 0.95
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 30 1.3
02_03_0144 + 15694766-15694883,15694980-15697612 30 1.3
07_01_1113 - 10292781-10293299 30 1.7
03_02_0972 - 12816807-12817016,12817099-12817215,12817963-128181... 29 2.2
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 29 2.9
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 29 3.8
08_02_0610 + 19307537-19308011,19308187-19310846 29 3.8
05_04_0302 - 20004802-20005360,20005412-20005623 29 3.8
04_01_0179 + 2021977-2024890,2025117-2025610 28 5.1
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 28 6.7
03_06_0726 - 35761959-35762063,35762232-35762336,35762543-357626... 28 6.7
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 28 6.7
09_03_0057 + 11944973-11947159 27 8.9
07_01_1131 - 10510404-10511000 27 8.9
>05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278
Length = 583
Score = 32.7 bits (71), Expect = 0.24
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Frame = +2
Query: 128 RQKLYALEDELWRNVSDPMWRQSDLGGDVELTKAF-----VALDELIQAVPRSRRPPPQL 292
R +Y L E W + P W ++L +E KA V D+ + A+ R+R Q
Sbjct: 78 RAAMYGLIPEDWGAYARP-W-VAELAAPLECLKALHLRRMVVTDDDLAALVRARGHMLQE 135
Query: 293 LDLDKCDRENANHRRTLQILCRIREDAVTARRCSGASSGMDGPHRSGADGP 445
L LDKC + + R + CR + CS A +G + H + P
Sbjct: 136 LKLDKCSGFSTDALRLVARSCRSLR-TLFLEECSIADNGTEWLHDLAVNNP 185
>11_06_0159 - 20780613-20781126,20781377-20781426
Length = 187
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 160 VEERVGSDVETI-RSGGRRRANKGFRGAGRVDS-GRTEESTAPASTLGFGQMRSRKCKSS 333
V + +G D + R GGRRR N+ G G D G +E S + + R C
Sbjct: 15 VVQLIGGDRHVVVRRGGRRRRNEAVHGTGAADELGLDDELAGHVSDVD-AERRGAPCAVR 73
Query: 334 TDITNTLPNSRG 369
D T+ S+G
Sbjct: 74 HDRLRTVAASQG 85
>01_05_0045 +
17535929-17536249,17536255-17536520,17537169-17537707,
17537779-17538386
Length = 577
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 190 TIRSGGRRRANKGFRGAGRVDSGRTEESTAPASTLGFGQMRS-RKCKSSTDITNTLPNSR 366
T R G RRR ++ F+G+G S E ST ++ + ++ R+ + TDI + R
Sbjct: 192 TSRDGMRRRLSRLFKGSGSSSSHHDESSTRSSAVVSMEDAKAPRRLLNGTDIDHVNDRER 251
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 473 LHRVRNRRLGVHQHRFGEVHPFPNWRRNSAGP 378
L ++ R+L H HR V P WRR P
Sbjct: 116 LSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSP 147
>02_05_0924 - 32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 166 ERVGSDVETIRSGGRRRANKGFRGAGRVDSGRTEESTAPASTLGFGQMRSR 318
E++ S++ ++RS RRAN G RG R DS AP G R +
Sbjct: 911 EKLASELASVRSPTPRRANSGLRGTRR-DSISRRHEPAPRRDNNAGYEREK 960
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 163 EERVGSDVETIRSGGRRRANKGFRGAGR 246
E VG V +R GGRR +G GAGR
Sbjct: 742 ERTVGGRVAVVRGGGRREHLEGEHGAGR 769
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 368 DAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPRHATXXTH 544
D +A+ C G S DG +SG C++ DE T ++ + H+ + T H
Sbjct: 457 DGESAKLCEGTISSFDGHLKSGQ------CFQEDEPTADGNKQKEESHMGNNNVTDCAH 509
>07_01_1113 - 10292781-10293299
Length = 172
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 196 RSGGRRRANKGFRGAGRVDSGRTEESTAPASTLGFGQM 309
RSGGRRR G G G D+G E+ +G G++
Sbjct: 41 RSGGRRRRGGGGDGDGDDDAGAREQGGGGDGGVGAGEL 78
>03_02_0972 -
12816807-12817016,12817099-12817215,12817963-12818111,
12818192-12818405,12818505-12818666
Length = 283
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 199 SGGRRRANKGFRGAGRVDSGRTEESTAPAS 288
S GRR A +G A VDSG+ +E A AS
Sbjct: 44 SAGRRPAKRGKAVAVEVDSGKEDEEAASAS 73
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 362 REDAVTARRCSGASSGMDGPHR 427
RE+A AR CSG G G HR
Sbjct: 700 REEAAAARACSGCRRGRRGEHR 721
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 337 DITNTLPNSRGRSHGPALFRRQFGNGWTSPKRC 435
D+ L + R + P RR+ G GWT+P +C
Sbjct: 301 DLAAVLRDWRNYTAAPPAARRRGGFGWTTPGKC 333
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 203 GGDVELTKAFVALDELIQAVPRSRRP 280
GG++ L + A+D ++Q+VPR R P
Sbjct: 976 GGEIVLVSSSPAMDGVLQSVPRRRTP 1001
>05_04_0302 - 20004802-20005360,20005412-20005623
Length = 256
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 202 GGRRRANKGFRGAGRVDSGRTEESTAPASTLGFGQMRSRKCKSSTDITNTLPNSRGRSHG 381
GGRRRA +G G V G E ++ LG G + + + ++ P R
Sbjct: 22 GGRRRA-RGLPGERSVHEGGGENTSTAELLLGMGGKAAYARRETAAEADSGPQRLDRDRP 80
Query: 382 PALFRRQFGNGW 417
+ +R ++ + W
Sbjct: 81 SSRWRWRYSSSW 92
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 243 SSATKAFVSSTSPPRSDCLHIGSDTFLHNSSSKAYS 136
++A SS++PP S GS ++NSSSKA S
Sbjct: 1098 AAAAATSTSSSTPPSSSSFS-GSSAMIYNSSSKAKS 1132
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 296 DLDKCDRENANHRRTLQILCRIREDAVTAR-RCSGA 400
DL K + E + H+R LQIL ++ + V+ R R GA
Sbjct: 256 DLLKVESERSYHQRVLQILDQLEREMVSERQRIEGA 291
>03_06_0726 -
35761959-35762063,35762232-35762336,35762543-35762665,
35763056-35763316,35763449-35763905,35764637-35764755,
35764851-35764919
Length = 412
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 202 GGRRRANKGFRGAGRVDSGRTE-ESTAPASTLGFGQMRSRKCKSSTDITNTLPNS 363
GG RA+ F+ G D G+ + + T+ A+ L ++ KSS D N LP+S
Sbjct: 81 GGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQILQKEVAKSSAD--NVLPSS 133
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 371 AVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPR 499
AV A + S D P R+GAD P + + DEE + D PR
Sbjct: 299 AVRAGSSATVLSAPDSP-RAGADKPLLPFSKADEEAEKKDVPR 340
>09_03_0057 + 11944973-11947159
Length = 728
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 107 LCSVDDLRQKLYALEDELWRNVSDPMWRQSDLGGDVELTKAFVALDELIQAVPRSRRP-- 280
L +DD+ +YA +D W+N +P+ + + G + LT + +L+ R
Sbjct: 337 LLVLDDVWDDVYANQDNRWQNFLEPL-KSAQQGSAILLTTRSQRVADLVNENRHFRLEGL 395
Query: 281 PPQLLD 298
PP + D
Sbjct: 396 PPTIFD 401
>07_01_1131 - 10510404-10511000
Length = 198
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 196 RSGGRRRANKGFRGAGRVDSGRTEESTAPASTLGFGQMRSRKCKSST 336
R GR R G G +GR + A A GFG+ R R+ +S+T
Sbjct: 138 RRAGRGRGGDYDAGGGDGTAGR--RADAAAGVAGFGRRRRRERRSAT 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,536
Number of Sequences: 37544
Number of extensions: 410285
Number of successful extensions: 1449
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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