Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H09
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 79 4e-16
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 78 6e-16
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 31 0.084
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 1.8
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 4.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 24 9.6
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 24 9.6
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 78.6 bits (185), Expect = 4e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +2
Query: 296 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHG 454
RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHG
Sbjct: 82 RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHG 134
Score = 73.7 bits (173), Expect = 1e-14
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +1
Query: 124 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 291
HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25 HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 51 MGRYSREPDNPAKSCKARGSNLR 119
M RYS P K KARG+ LR
Sbjct: 1 MVRYSASPALETKCAKARGAYLR 23
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 78.2 bits (184), Expect = 6e-16
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +2
Query: 296 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHG 454
RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHG
Sbjct: 82 RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHG 134
Score = 73.3 bits (172), Expect = 2e-14
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +1
Query: 124 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 291
HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25 HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.1 bits (67), Expect = 0.084
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 266 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 445
K S +QH+ PK SA LL +LR+ N TL++ + D I C +R+ R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208
Query: 446 A 448
+
Sbjct: 209 S 209
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 284 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 394
+H WP EF+ + +++AE N+ + D +L+I
Sbjct: 4 EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 289 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 206
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 4.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -1
Query: 368 FCCQRLIQRSSITARGI------RRISWASXPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 207
FC LI S A+ + R ++ + ++PN A R PP K++N I + F
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181
Query: 206 IT 201
T
Sbjct: 182 AT 183
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 131 RTHMRPQWQSGRCRSVVL 184
R + W+ GRCR VVL
Sbjct: 252 RCRVECNWRHGRCRQVVL 269
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 229 FRRFNGGVGRCAQAKQFGTTQGSLAQEIRRIPLAVIEE 342
FRR N G Q +F T +GS +E + L I E
Sbjct: 333 FRRLNAGCLSLPQLFKFITEEGSCEKEAMKTRLNAIYE 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,503
Number of Sequences: 5004
Number of extensions: 32499
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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