Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H08
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 111 1e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 109 3e-25
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.8
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 3.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 5.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 5.4
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 7.2
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.2
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.5
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 9.5
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 111 bits (266), Expect = 1e-25
Identities = 53/78 (67%), Positives = 63/78 (80%)
Frame = +1
Query: 418 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 597
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 598 LAQNVHLSINFLVSLLKK 651
LA N+ L+INFLVSLLKK
Sbjct: 178 LAANLSLAINFLVSLLKK 195
Score = 110 bits (264), Expect = 2e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +3
Query: 102 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 281
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHD 72
Query: 282 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 437
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 109 bits (262), Expect = 3e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +3
Query: 102 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 281
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHD 72
Query: 282 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 437
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
Score = 108 bits (259), Expect = 8e-25
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +1
Query: 418 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 597
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 598 LAQNVHLSINFLVSLLKK 651
L N+ L++NFLVSLLKK
Sbjct: 178 LIANIMLAVNFLVSLLKK 195
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 99 CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 215
C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 939 CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 596 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 498
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 487 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 633
E + +++ G F + GHV T ELA+NV + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 537 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 638
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 78 LXDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 209
L + L++ V SK+ + T+E Q+ N+D QK F
Sbjct: 439 LQNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 609 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 445
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 444 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 554
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 377 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 276
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 102 VNAVLQSSKDKKRNFLETV 158
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 212 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 111
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 291 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 157
P H A LQE A AA+ L+ ++NA G +S D +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,993
Number of Sequences: 5004
Number of extensions: 53684
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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