Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H08
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   121   4e-28
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   118   5e-27
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   118   5e-27
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    28   6.6  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  121 bits (292), Expect = 4e-28
 Identities = 60/122 (49%), Positives = 74/122 (60%)
 Frame = +3

Query: 72  KCLXDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 251
           K   ++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M
Sbjct: 3   KVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNM 62

Query: 252 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRF 431
           +VCV GDQ H DEA   ++P M                           SESLIKQIPR 
Sbjct: 63  KVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRI 122

Query: 432 VG 437
           +G
Sbjct: 123 LG 124



 Score =  118 bits (283), Expect = 5e-27
 Identities = 53/78 (67%), Positives = 65/78 (83%)
 Frame = +1

Query: 418 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 597
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 598 LAQNVHLSINFLVSLLKK 651
           L  N+ LSINFLVSLLKK
Sbjct: 178 LVSNISLSINFLVSLLKK 195


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  118 bits (283), Expect = 5e-27
 Identities = 53/78 (67%), Positives = 65/78 (83%)
 Frame = +1

Query: 418 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 597
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 598 LAQNVHLSINFLVSLLKK 651
           L  N+ LSINFLVSLLKK
Sbjct: 148 LVSNISLSINFLVSLLKK 165



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +3

Query: 177 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 356
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 357 XXXXXXXXXXXXXXSESLIKQIPRFVG 437
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  118 bits (283), Expect = 5e-27
 Identities = 53/78 (67%), Positives = 65/78 (83%)
 Frame = +1

Query: 418 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 597
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 598 LAQNVHLSINFLVSLLKK 651
           L  N+ LSINFLVSLLKK
Sbjct: 117 LVSNISLSINFLVSLLKK 134



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +3

Query: 249 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 428
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 429 FVG 437
            +G
Sbjct: 61  ILG 63


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -2

Query: 624 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 451
           D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385

Query: 450 VQTGTQQNGESA 415
              G   NG  A
Sbjct: 386 ATVGDVNNGNQA 397


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 126 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 236
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 415 SRFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 531
           SR P   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 143 SRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 618 KMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLLVGEKTREFTSFVQTG 439
           + H+L +L++  V      R+T HLL   L  S +++ LLR   +  +  R F  + +  
Sbjct: 547 RTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQIQRQLYRNFVLWAKNE 601

Query: 438 TQQNGES 418
              N ++
Sbjct: 602 IAANNDA 608


>AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical
           protein Y81B9A.2 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 427 VLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK--FQMKKVLCLSVAVGHVDMT 588
           VL  P +    K PG L    ++  K+  +KG++K  F   K+L  S A   VD++
Sbjct: 53  VLAAPPIKPMQKEPGTLLPPRAVVYKLPAIKGSMKDAFSAHKLLKKSYAKPIVDIS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,563
Number of Sequences: 27780
Number of extensions: 314899
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)