Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H03
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    82   4e-17
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   0.96 
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.7  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    27   2.2  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   3.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   6.8  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = +1

Query: 181 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPFKTPHL*LRQSGFIN 357
           DF I+P + S  K+DTA WPLLLKNFD+L VRT HYTP+P GN+P K P      SG IN
Sbjct: 9   DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68

Query: 358 VDXRATPA 381
           +D  A P+
Sbjct: 69  LDKPANPS 76



 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +3

Query: 369 SNPSSHKVXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
           +NPSSH+V +W+K+ L+ +K    G  DPKVTG LI+
Sbjct: 73  ANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLII 109


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 235 PLLLKNFDRLNVRTNHYTPLPFGNSPFKTP 324
           P+LL   +  N   N  TP PFG SP   P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 229 KRCPASSRSPKVRF*SRQSSEKLPTKHHPCFFSFSSQKVSRYRAAVPPSF 80
           KRC A+++  ++    R+  E LP K  P   S S++    Y +++ P F
Sbjct: 23  KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 263 KRSKFFNNKGQ*AVSSFFT 207
           K+SK+F+ +G   +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 SNPSSHKVXSWIKRXLKSKKLVIP 440
           ++P    V SW+K   +SKK V+P
Sbjct: 885 NDPDDDTVFSWMKNFKQSKKEVVP 908


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 231  VSGVQLLHALRRFDFEVANRLKSSQRNTILVF 136
            +SG   LH+LR  + EV   ++  Q  ++L+F
Sbjct: 1106 ISGDGKLHSLRMKEPEVVQTIRPGQEVSVLIF 1137


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 250 NFDRLNVRTNHYTPLPFGNSPFKTP 324
           ++DR + + NH +P P   +P K+P
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,371
Number of Sequences: 5004
Number of extensions: 40463
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)