Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_H03
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 80 1e-15
03_03_0094 + 14378953-14380728 78 5e-15
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 36 0.026
11_06_0293 + 22018128-22018556 34 0.079
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 34 0.079
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 28 5.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 27 6.8
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179... 27 6.8
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080 27 9.0
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 27 9.0
>07_03_1408 - 26353389-26355191
Length = 600
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +1
Query: 184 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPFKTPHL*LRQSGFINVD 363
+ I+P V LDT+ WPLLLKN+DRLNVRT HYTPLP G+SP K P + G IN+D
Sbjct: 50 YLIKPQSLVPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLD 109
Query: 364 XRATPA 381
+ P+
Sbjct: 110 KPSNPS 115
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +3
Query: 369 SNPSSHKVXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
SNPSSH+V +WIKR L+ K G DPKVTG LIV
Sbjct: 112 SNPSSHEVVAWIKRLLRVDKTGHSGTLDPKVTGNLIV 148
>03_03_0094 + 14378953-14380728
Length = 591
Score = 77.8 bits (183), Expect = 5e-15
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = +1
Query: 184 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPFKTPHL*LRQSGFINVD 363
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SP K P + G IN+D
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 364 XRATPA 381
+ P+
Sbjct: 114 KPSNPS 119
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/37 (62%), Positives = 27/37 (72%)
Frame = +3
Query: 369 SNPSSHKVXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
SNPSSH+V +WIKR L+ +K G DPKVTG LIV
Sbjct: 116 SNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIV 152
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 369 SNPSSHKVXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
SN SH+V +W K L +K G DPKVTG LIV
Sbjct: 39 SNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIV 75
>11_06_0293 + 22018128-22018556
Length = 142
Score = 33.9 bits (74), Expect = 0.079
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +3
Query: 390 VXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
V +WIKR L+ K G DPKVTG LIV
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIV 88
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 33.9 bits (74), Expect = 0.079
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +3
Query: 390 VXSWIKRXLKSKKLVIPGPXDPKVTGWLIV 479
V +WIKR L+ K G DPKVTG LIV
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIV 127
>08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 369 SNPSSHKVXSWIKRXLKSKKLVIPGPXDP 455
+NP++ + SW+ L +K + +P P +P
Sbjct: 1041 NNPNARPLMSWVVSSLDNKDIELPEPKEP 1069
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 216 LLHALRRFDFEVANRLKSSQRNTILVFFLFLLRKCLVTGLQYLRHFDKLTRI 61
L HALR + A RL SS+ ++ + L L KC +G ++ DKL +I
Sbjct: 1004 LNHALRIVEVLGAYRLSSSELRLLVRYILQLKVKC--SGHLFVNMMDKLIQI 1053
>02_01_0269 +
1788788-1789508,1789629-1789658,1790127-1790368,
1790595-1790803,1791924-1792182
Length = 486
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 258 IEVFQQQRPVSGVQLLHALRRFDFEVANRLKSS 160
IEVFQ + V ++LLHA D V +R+K +
Sbjct: 222 IEVFQTGQEVDRLELLHAHGLVDKNVVDRVKDN 254
>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
Length = 463
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 430 WSFRAPXIRKLRVGLSFGLNRAPKIP 507
W+ RAP +RKL + + G + +IP
Sbjct: 220 WAIRAPKLRKLYITMEMGDDNGCRIP 245
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 247 KNFDRLNVRTNHYTPLPFGNSPFKTP 324
+++D+ R+ Y+P P G SP+++P
Sbjct: 139 RSYDQRYSRSPRYSPPPRGRSPYRSP 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,622
Number of Sequences: 37544
Number of extensions: 274291
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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