Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H03
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.62 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -3

Query: 256 RSFSTTKASKRCPASSRSPKVRF*SRQ-----SSEKLPTKHH 146
           + FS++   +R P+SSRSP     + Q     + EK    HH
Sbjct: 26  KRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHH 67



 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 479 NDKPTRNFRIXGARNDQF 426
           NDK   NF +   RND F
Sbjct: 89  NDKKEENFIVDRLRNDLF 106


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 372 NPSSHKVXSWIKR 410
           +P +HK+  W+KR
Sbjct: 335 SPQTHKMAPWVKR 347


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 372 NPSSHKVXSWIKR 410
           +P +HK+  W+KR
Sbjct: 335 SPQTHKMAPWVKR 347


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 343 SGFINVDXRATPAPTKXFH 399
           S  ++   RA PAP K FH
Sbjct: 39  SDLVHPHWRAFPAPGKHFH 57


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 343 SGFINVDXRATPAPTKXFH 399
           S  +    RA PAP K FH
Sbjct: 39  SDLVRPHWRAFPAPGKHFH 57


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 375 PSSHKVXSWIKR 410
           PS+HK+  W+++
Sbjct: 327 PSTHKMAPWVRK 338


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 425  KTGHSGPPRSESYGLAYRLA 484
            K+GH+G      Y L YR A
Sbjct: 1425 KSGHNGGASLTGYTLHYRTA 1444


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 425  KTGHSGPPRSESYGLAYRLA 484
            K+GH+G      Y L YR A
Sbjct: 1421 KSGHNGGASLTGYTLHYRTA 1440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,828
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)