Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G18
(613 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 209 7e-54
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 209 7e-54
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 209 7e-54
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 209 7e-54
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 209 7e-54
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 209 7e-54
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 156 7e-38
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 154 2e-37
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 91 4e-18
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTAAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 209 bits (510), Expect = 7e-54
Identities = 97/149 (65%), Positives = 113/149 (75%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GEIV NFGIWLRY+SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHN 482
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHD 147
Query: 483 STIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
S I+FPLP RV + F KR +T+F
Sbjct: 148 SKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 156 bits (378), Expect = 7e-38
Identities = 72/108 (66%), Positives = 83/108 (76%)
Frame = +3
Query: 123 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESR 302
Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE V NFGIWLR +SR
Sbjct: 28 YRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGETVYCGQVFEKSPLRVKNFGIWLRCDSR 87
Query: 303 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAA 446
SG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+ VE I A+
Sbjct: 88 SGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 154 bits (374), Expect = 2e-37
Identities = 70/100 (70%), Positives = 79/100 (79%)
Frame = +3
Query: 270 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 449
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 450 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRXSTYF 569
CRRP VKQFH+S I+FPLP RV + F KR +T+F
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 140
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 90.6 bits (215), Expect = 4e-18
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = +3
Query: 372 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 551
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 552 RXSTYF 569
R +T+F
Sbjct: 61 RPNTFF 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,592,735
Number of Sequences: 237096
Number of extensions: 1628869
Number of successful extensions: 3394
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -