Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G17
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 60 2e-10
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.34
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 1.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 4.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 5.6
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 24 9.7
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 24 9.7
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 24 9.7
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 59.7 bits (138), Expect = 2e-10
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2
Query: 200 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 331
C K +GE + PC F Y+SLCP EWV++WD QR GTF I
Sbjct: 40 CIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83
Score = 39.5 bits (88), Expect = 2e-04
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 142 FPNQNQTRHCYQSYVDFHR 198
FPN NQT+HC+QSY+D+ R
Sbjct: 21 FPNTNQTKHCFQSYIDYFR 39
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.1 bits (62), Expect = 0.34
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 109 PTSKQHLSTHGFPNQNQTRHCYQS 180
P SK+ +STHGFP+ N + Y S
Sbjct: 400 PHSKEIMSTHGFPDNNLSIWSYSS 423
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 1.0
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 168 LLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGST-SGTTSAPKAPSPVGFRS*T 344
LLP+ RG PP R+ +N I+ T S S +T +S+P + SP+ S
Sbjct: 423 LLPRKRGRPPKKRQ---ENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSPLLPSSDR 479
Query: 345 FPML 356
P+L
Sbjct: 480 LPLL 483
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 144 P*PKSDEALLP-KLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 320
P K ++ LP + +P +++ + +TS AT++ +S+ + SAP+A S
Sbjct: 291 PFKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 158 RRGTATKVTWTSTXCQKVRGEKYEP 232
RRG T+ WT+T K+EP
Sbjct: 1208 RRGVGTRFMWTATFTMDKTPLKFEP 1232
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 296 CPTCRPTHWGRETCTL 249
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 9.7
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Frame = +3
Query: 165 ALLPKLRGLPPXARKFAAKNTSHATISRE-----CTGLSAPMSGSTSGTTSAPKAPSPVG 329
+++ G PP A KF+ K S +S + + P+ P AP+P
Sbjct: 79 SIMSATMGTPPSALKFSKKKISRPVVSEDTFKDKLPRATIPVKPEPQPQYKIPAAPAPTS 138
Query: 330 FR 335
R
Sbjct: 139 KR 140
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 118 KQHLSTHGFPNQNQTRHCYQSYVDFH 195
K +L T G+ + + T+ C+ S VD H
Sbjct: 331 KHNLLTLGWIHTHPTQTCFMSSVDLH 356
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 126 PFDP-RXP*PKSDEALLPKLRGLPPXARKF 212
P DP + P++DE LP G+P A+ F
Sbjct: 54 PLDPTKDVEPRTDELWLPFHEGIPEVAKGF 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,782
Number of Sequences: 5004
Number of extensions: 34478
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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