Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G16
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 50 4e-07
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 31 0.19
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.44
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 29 0.77
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 4.1
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 7.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 7.2
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 7.2
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.2
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 7.2
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 7.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 9.5
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 9.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.5
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 49.6 bits (113), Expect = 4e-07
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Frame = +3
Query: 222 LIYSEVTYYLDSNLVFKFMPDIDMDEKLRINIDITVAMPCSNIGSDILDSTSQSVFGFGE 401
L++S+ Y+ + + E + +NIDIT+AMPCSN+ D++D T V
Sbjct: 45 LVFSQCVQYIRGIREQELFIYDSVSELMDLNIDITIAMPCSNLRIDVVDRTKDLVLATEA 104
Query: 402 LQEEDTWFELTEEQQDAFDAIKYINSYLREEYHSVWQLLWKKGHGSVRSTIPERKTKMNT 581
L E+ + + D Y + Y L W + T RK K N
Sbjct: 105 LTLEEAFIK---------DMPTSSTIYKNDRYAG---LRWAR-------TEKFRK-KNNA 144
Query: 582 RP---DACRLHGVLTLNKVAGNFHIT 650
P ACR++G L +N+V G HIT
Sbjct: 145 EPGSGTACRIYGQLVVNRVNGQLHIT 170
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 588 DACRLHGVLTLNKVAGNFHI 647
+ C L G L++N++AGNFHI
Sbjct: 195 EGCNLAGQLSVNRMAGNFHI 214
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 393 FGELQEEDTWFELTEEQQDAFDAIKYINSYLREEYHSVWQLLWKKGHGSVRSTIP 557
F + + +F++T +++ N+ +HS WQ KK H + +T+P
Sbjct: 26 FANYKHTNDFFKITATTYALINSVIVSNNCCNRRFHSTWQ---KKKHDDLTATVP 77
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 351 GSDILDSTSQSVFGFGELQEEDTWFELTEEQQDAFDAIKYINSYLREEYH 500
G+++L+ S F +ED F T + D ++N LR E+H
Sbjct: 207 GNELLNKASSGSFQVKRRWDEDVVFRNTHKGVDDTPRPGFVNDMLRSEFH 256
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 420 WFELTEEQQDAFDAIKYINSYLREEYHSVWQLLWKKGHGSVRSTIPERKTKMNTRPDA 593
W +LTE Q AFD +++ +++E+ Q L ++S +R N PD+
Sbjct: 4296 WEDLTESQSQAFDDSEFM--HVKEDEEEDLQALGNAEKDQIKSI--DRDESANQNPDS 4349
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 86 RYRGKKNILEKVKEYDAFPKVPDEYVASTP 175
+Y +K E+ +EY +PD+Y+ +P
Sbjct: 71 KYSYEKRYQERDREYARSKNIPDQYIGRSP 100
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 408 LVIHRIRKHFAR*SPRYQNRCSSKALLRLYRCLFVTFR 295
L ++IRKHF + P CS +A +C FV F+
Sbjct: 223 LADYKIRKHFEQYGPLKSVVCSHRA-----KCAFVNFK 255
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 136 SIVFLYFFQNVLFPSIP*HVFLVLY 62
S+++L F V F S+P H+ VLY
Sbjct: 1181 SMIYLQFRTYVSFSSLPLHISTVLY 1205
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 334 CLARTSVLISWTLPRKVFSDSVNYKRKTLGSSSQ 435
CL+ + ++ S T+P F+D V+ TL S Q
Sbjct: 162 CLSSSPMIRSHTIPSLSFTDQVSTTISTLDKSEQ 195
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Frame = +3
Query: 468 YINSYLREEYHSVW-----QLLWKKGHGSVRSTIPERKTKMN 578
+I EE H +W +LLWK HGS + T N
Sbjct: 525 FILKLRNEESHKLWMSVLNRLLWKNEHGSPKDIRSAASTPAN 566
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 216 LWLIYSEVTYYLDSNLVFKFMPDIDMDEKLRINIDITVAMPCSNIGSDILDSTSQSVF 389
L+L+ S + + F D++ E R+N +V + CSN + + S + S+F
Sbjct: 335 LYLVLSIILLSFANPFQFMVFKDLEQAELDRLNAVKSVLVECSNYSGNFIPSLN-SIF 391
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 624 YLRSELHEVYRHPAVCSFSFY 562
YLRS++ YR P V ++FY
Sbjct: 394 YLRSDVLASYRQPLVQKYTFY 414
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 297 EKLRINIDITVAMPCSNIGSDILDSTSQSVFGFGELQEEDT 419
EKLRI ++ + M C +I +L TS+++ G + +E +
Sbjct: 741 EKLRIIVEFSEEMDCKSISKSLL-ITSKTLNGDSPVLDESS 780
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 465 KYINSYLREEYHSVWQLLWKKGHGS 539
K +NSY+R+ +HSV W H +
Sbjct: 393 KKLNSYIRDSFHSV-NDFWFSSHAT 416
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 357 DILDSTSQ--SVFGFGELQEEDTWFELTEEQQD 449
D++D + S G GEL E D ELT+E+++
Sbjct: 320 DVVDEIREVFSTRGRGELDELDDMEELTDEEEE 352
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 212 NEKCDN*KRSSXPGYSRRIHQEL*GKHR 129
NEKC+N K+SS ++ + QEL K++
Sbjct: 1418 NEKCENLKKSSLTRFA-HLKQELTNKNK 1444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,420
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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