Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_G16
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374...    35   0.065
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427...    34   0.11 
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828...    32   0.46 
04_01_0029 + 372486-373426,373533-373938,374380-374832                 30   1.4  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     29   2.4  
07_01_0165 + 1159821-1161362                                           28   7.4  

>05_05_0301 +
           23936126-23936267,23937101-23937174,23937338-23937421,
           23937502-23937582,23938304-23938384,23938503-23938595,
           23939094-23939270,23939838-23939927,23940859-23940925,
           23941218-23941309
          Length = 326

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 216 LWLIYSEVTYYLDSNLVFKFMPDIDMDEKLRINIDITV-AMPCSNIGSDILDSTSQ 380
           L L  SE   Y  S    K + D    E+LR+N D+T  ++PC+ +  D +D + +
Sbjct: 40  LLLFVSETRSYFYSATETKLVVDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGE 95



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 588 DACRLHGVLTLNKVAGNFH 644
           + C +HG L ++KVAGN H
Sbjct: 201 EGCNVHGFLDVSKVAGNLH 219


>03_06_0204 +
           32341756-32341843,32341943-32342025,32342690-32342765,
           32342876-32342943,32343001-32343045,32343308-32343392,
           32344270-32344385,32344497-32344580,32345394-32345540,
           32345845-32345956,32346027-32346146,32346338-32346411
          Length = 365

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 588 DACRLHGVLTLNKVAGNFHIT 650
           + CR++GVL + +VAGNFHI+
Sbjct: 184 EGCRVYGVLDVQRVAGNFHIS 204


>04_04_0097 -
           22782031-22782122,22782504-22782570,22782769-22782861,
           22782981-22783034,22783163-22783214,22783346-22783413,
           22783532-22783711,22783843-22783935,22784585-22784665,
           22785011-22785091,22785204-22785331,22786502-22786643
          Length = 376

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 588 DACRLHGVLTLNKVAGNFH 644
           + C ++G L +NKVAGNFH
Sbjct: 191 EGCNIYGFLEVNKVAGNFH 209


>04_01_0029 + 372486-373426,373533-373938,374380-374832
          Length = 599

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 396 GELQEEDTWFELTEEQQDAFDAIKYINSYLREEYHSVWQLLWKKGHGSVRSTIPERKTKM 575
           GE Q++    ++   Q D     K IN        + +Q+ WK  HGS   ++   KT M
Sbjct: 357 GEKQQKGH-VDVHPHQLDEMLLPKAINYLYHNAEATTYQMYWKSKHGSAHLSV--EKTSM 413

Query: 576 NTRPDACR 599
            T P A R
Sbjct: 414 ATPPQARR 421


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 352 PMFEQGIATVISMFIRNFSSMSMS--GINLNTKLLSK*YVTSL*INQRIMKNVIIENVPP 179
           PM E G     +M +     ++ S  G N +   L + +   L +   ++KN   +   P
Sbjct: 323 PMVEVGSDMARAMMLDGLLKLNFSSPGSNSSHDQLQRPFQVLL-MELELLKNYYQQAAAP 381

Query: 178 XRGTRDV-FIRNFRESIVFLYFF 113
              ++ + F  NF  SI+FLYFF
Sbjct: 382 VVMSQPILFCTNFLSSIIFLYFF 404


>07_01_0165 + 1159821-1161362
          Length = 513

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 408 EEDTWFE--LTEEQQDAFDAIKYINSYLREEYHSVWQLLWKKGHGSVRSTIPERKTKMN 578
           EE  W+   +T EQ D     K I S  +    +  QLLWK  H +    +   KT+MN
Sbjct: 393 EEQPWYHRNITLEQLDKVMLPKAIGSINQNSEATAHQLLWKSKHEAAFFHL--GKTRMN 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,048,824
Number of Sequences: 37544
Number of extensions: 305501
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)