Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G11
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 83 1e-17
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 83 2e-17
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 0.96
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 0.96
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 1.3
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 27 1.3
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 2.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 2.9
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 5.1
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 5.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.7
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.7
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 6.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 8.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 24 8.9
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 8.9
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 83.4 bits (197), Expect = 1e-17
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
RG MP IGYG+NKKTR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR
Sbjct: 44 RGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRV 103
Query: 397 LIVEKSPA 420
IVEK+ A
Sbjct: 104 EIVEKARA 111
Score = 64.1 bits (149), Expect = 9e-12
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSI 227
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G+I
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTI 47
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 83.0 bits (196), Expect = 2e-17
Identities = 38/68 (55%), Positives = 50/68 (73%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
RG MP IGYG+NKKTR+ +PNG + LV NV ++E+L+M N+ Y AEIA VS++KR
Sbjct: 44 RGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRV 103
Query: 397 LIVEKSPA 420
IVEK+ A
Sbjct: 104 EIVEKARA 111
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 102 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSI 227
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G+I
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTI 47
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 0.96
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 176 TPIPLKFV--IAIRLMPDKSLRP 114
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 0.96
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSILDAQHRLRF 254
A+RP +PT ++KRT + D L++ D +R+ K + ++ R
Sbjct: 1023 ALRPRSKPTYMQKRTVLLNAEERKVRDLLQK--VMTLHTDKEAKRKAKKAAEHERYHKRM 1080
Query: 255 QQEDPSYAPK 284
Q+E+ +Y K
Sbjct: 1081 QKEEQAYIEK 1090
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 156 KLKRNWRKPRGIDNRVRRRFKGSILDAQHRLRFQQEDPSYAPKW 287
K +R R R + R R+R S + Q+ +E+ Y+P +
Sbjct: 157 KKRRQERSARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPSY 200
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 168 NWRKPRGIDNRVRRRF-KGSILDAQHRLRFQQEDPSYAPKWIP*GPSS 308
N+ + RG+ + + KG + A+ LRFQQ+ + +W+ P S
Sbjct: 158 NYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 127 LSGINRIAMTNLRGIGVNLEVLTTESAGDSRGQYLMPNIGYGSNKKTR 270
L +N+ A++NL+ G +E L T + D + + G KTR
Sbjct: 61 LENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGVHAIGIRSKTR 108
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 2.9
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 93 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSILDAQHRLRFQQEDPS 272
R T VK+R K I+ S+ + KP G R R++ ++ + +LR + PS
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALPGLRTKLRRNFDLPS 599
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 5.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 62 NIQDGYKTCLQADNRQKEDEEIYQASIGS 148
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 5.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 62 NIQDGYKTCLQADNRQKEDEEIYQASIGS 148
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 126 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFK 218
F H D YD+L NW++ ++ +RFK
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFK 852
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 229 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKE 321
++ NIGYG+ K + + +K +H++ E
Sbjct: 533 ILYNIGYGNPKASNDEIVEAAKKAKIHDIIE 563
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 150 YDKLKRNWRKPRGIDNRVRRRFKGSILD 233
Y L + W P ID+R + + G LD
Sbjct: 100 YGALPQTWEDPNVIDSRTKMKGDGDPLD 127
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.2 bits (50), Expect = 8.9
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 283 NGFRKVLVHNVKELEILMMQNRKYCAE 363
N R+ +HN++ ++ L+ Q ++C +
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCID 621
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.2 bits (50), Expect = 8.9
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 106 SKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAGDSRGQYL-MPNIGYGSNKKTRHMLP 282
+K+ +R + NR+ RGI T+ES G+ R YL M + SNK R L
Sbjct: 1189 NKKLKRTVESSNRVIADLQRGITEKDVSSTSESVGE-RSNYLNMVALLNESNKSLRENLE 1247
Query: 283 NGFRKVLVHNVKELEIL 333
+V+ +++E L
Sbjct: 1248 RN-EEVITELREKIETL 1263
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 128 KSLRPLFDDCRPVNRSYSHLVC 63
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,843
Number of Sequences: 5004
Number of extensions: 34192
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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