Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G11
(438 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X03342-1|CAA27048.1| 135|Homo sapiens protein ( Human mRNA for ... 115 6e-26
BC070209-1|AAH70209.1| 135|Homo sapiens ribosomal protein L32 p... 115 6e-26
BC011514-1|AAH11514.1| 135|Homo sapiens ribosomal protein L32 p... 115 6e-26
AB061831-1|BAB79469.1| 135|Homo sapiens ribosomal protein L32 p... 115 6e-26
BC015974-1|AAH15974.1| 107|Homo sapiens RPS29 protein protein. 103 2e-22
BC053996-1|AAH53996.1| 33|Homo sapiens RPL32P3 protein protein. 51 2e-06
BC015389-1|AAH15389.1| 82|Homo sapiens RPL32P3 protein protein. 49 6e-06
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 29 5.3
L15297-1|AAA65619.1| 623|Homo sapiens cyclic nucleotide-gated c... 29 5.3
L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated c... 29 5.3
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 29 5.3
D86981-1|BAA13217.1| 681|Homo sapiens KIAA0228 protein protein. 29 7.0
BC018121-1|AAH18121.1| 585|Homo sapiens amyloid beta precursor ... 29 7.0
AF017782-1|AAC83973.1| 585|Homo sapiens PAT1 protein. 29 7.0
>X03342-1|CAA27048.1| 135|Homo sapiens protein ( Human mRNA for
ribosomal protein L32. ).
Length = 135
Score = 115 bits (277), Expect = 6e-26
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
+GQ LMPNIGYGSNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50 KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109
Query: 397 LIVEKS 414
IVE++
Sbjct: 110 AIVERA 115
Score = 98.7 bits (235), Expect = 8e-21
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSIL 230
A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKG IL
Sbjct: 3 ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQIL 54
>BC070209-1|AAH70209.1| 135|Homo sapiens ribosomal protein L32
protein.
Length = 135
Score = 115 bits (277), Expect = 6e-26
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
+GQ LMPNIGYGSNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50 KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109
Query: 397 LIVEKS 414
IVE++
Sbjct: 110 AIVERA 115
Score = 98.7 bits (235), Expect = 8e-21
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSIL 230
A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKG IL
Sbjct: 3 ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQIL 54
>BC011514-1|AAH11514.1| 135|Homo sapiens ribosomal protein L32
protein.
Length = 135
Score = 115 bits (277), Expect = 6e-26
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
+GQ LMPNIGYGSNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50 KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109
Query: 397 LIVEKS 414
IVE++
Sbjct: 110 AIVERA 115
Score = 98.7 bits (235), Expect = 8e-21
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSIL 230
A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKG IL
Sbjct: 3 ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQIL 54
>AB061831-1|BAB79469.1| 135|Homo sapiens ribosomal protein L32
protein.
Length = 135
Score = 115 bits (277), Expect = 6e-26
Identities = 51/66 (77%), Positives = 59/66 (89%)
Frame = +1
Query: 217 RGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 396
+GQ LMPNIGYGSNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50 KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109
Query: 397 LIVEKS 414
IVE++
Sbjct: 110 AIVERA 115
Score = 98.7 bits (235), Expect = 8e-21
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGSIL 230
A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKG IL
Sbjct: 3 ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQIL 54
>BC015974-1|AAH15974.1| 107|Homo sapiens RPS29 protein protein.
Length = 107
Score = 103 bits (248), Expect = 2e-22
Identities = 51/88 (57%), Positives = 63/88 (71%)
Frame = +1
Query: 151 MTNLRGIGVNLEVLTTESAGDSRGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEI 330
M+ LR G N EVLTT R + MPNIGYG NKKT+H+LP+GF K LVHNVKELE+
Sbjct: 1 MSKLRVTGGNTEVLTTGFIEGLRARS-MPNIGYGRNKKTKHILPSGFWKFLVHNVKELEV 59
Query: 331 LMMQNRKYCAEIAHGVSSKKRKLIVEKS 414
L++ N+ YC EI H VSSK K I+E++
Sbjct: 60 LLVSNKSYCVEITHDVSSKNCKAILERA 87
>BC053996-1|AAH53996.1| 33|Homo sapiens RPL32P3 protein protein.
Length = 33
Score = 51.2 bits (117), Expect = 2e-06
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 167
A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3 ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33
>BC015389-1|AAH15389.1| 82|Homo sapiens RPL32P3 protein protein.
Length = 82
Score = 49.2 bits (112), Expect = 6e-06
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3
Query: 75 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 164
A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3 ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel beta
subunit protein.
Length = 1251
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 187 VLTTESAGDSRGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKEL-EILM 336
VL T AG G+ + +G G N++T +++ +GF + + + K+L EIL+
Sbjct: 1018 VLVTLKAGSVFGEISLLAVG-GGNRRTANVVAHGFTNLFILDKKDLNEILV 1067
>L15297-1|AAA65619.1| 623|Homo sapiens cyclic nucleotide-gated
cation channel protein.
Length = 623
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 187 VLTTESAGDSRGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKEL-EILM 336
VL T AG G+ + +G G N++T +++ +GF + + + K+L EIL+
Sbjct: 390 VLVTLKAGSVFGEISLLAVG-GGNRRTANVVAHGFTNLFILDKKDLNEILV 439
>L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated
cation channel protein.
Length = 909
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 187 VLTTESAGDSRGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKEL-EILM 336
VL T AG G+ + +G G N++T +++ +GF + + + K+L EIL+
Sbjct: 676 VLVTLKAGSVFGEISLLAVG-GGNRRTANVVAHGFTNLFILDKKDLNEILV 725
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 187 VLTTESAGDSRGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKEL-EILM 336
VL T AG G+ + +G G N++T +++ +GF + + + K+L EIL+
Sbjct: 1012 VLVTLKAGSVFGEISLLAVG-GGNRRTANVVAHGFTNLFILDKKDLNEILV 1061
>D86981-1|BAA13217.1| 681|Homo sapiens KIAA0228 protein protein.
Length = 681
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 268 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 402
RH+L + F+ ++ H VK +L + C+ IA ++ K K I
Sbjct: 172 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 216
>BC018121-1|AAH18121.1| 585|Homo sapiens amyloid beta precursor
protein (cytoplasmic tail) binding protein 2 protein.
Length = 585
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 268 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 402
RH+L + F+ ++ H VK +L + C+ IA ++ K K I
Sbjct: 76 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120
>AF017782-1|AAC83973.1| 585|Homo sapiens PAT1 protein.
Length = 585
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 268 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 402
RH+L + F+ ++ H VK +L + C+ IA ++ K K I
Sbjct: 76 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,697,492
Number of Sequences: 237096
Number of extensions: 1171570
Number of successful extensions: 3228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3227
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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