Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G08
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 151 5e-38
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 63 2e-11
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 4e-10
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 59 5e-10
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 55 6e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 1e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 52 7e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 50 3e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 49 4e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 48 9e-07
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 47 2e-06
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 46 4e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 45 6e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 45 6e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 2e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 43 3e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 42 4e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 4e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 8e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 2e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.009
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.020
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.047
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 32 0.062
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.062
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.11
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.14
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.0
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 27 1.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 1.3
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 26 3.1
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 26 3.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 4.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 5.4
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 5.4
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 7.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 7.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 7.2
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 25 7.2
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 9.5
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 9.5
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 9.5
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 151 bits (367), Expect = 5e-38
Identities = 64/113 (56%), Positives = 88/113 (77%)
Frame = +3
Query: 114 MTNVKNVLKLSERELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNI 293
M +++ + +L+E+EL +SWH Y DSA+I++G L +DL E D++CVFS++GE V+I
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 294 NMVRDKTTGKPKGFAFLCYEDQRSTILAVDNLNSIKILGRTLRVDHCEQYKVP 452
N+VRDK TGK KGFAFL YEDQRST+LAVDN+ ++K+L R +RVDH YKVP
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVP 113
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 63.3 bits (147), Expect = 2e-11
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +3
Query: 201 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAV 380
S ++VG +PY++ E VI +F Q G + + +V D +G+PKG+ F Y D + AV
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 381 DNLNSIKILGRTLRVD 428
NLN+ R LRVD
Sbjct: 64 RNLNNYDAGTRRLRVD 79
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 59.3 bits (137), Expect = 4e-10
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +3
Query: 186 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRS 365
++ + +A +FVGG+P D TE + F+Q+G +++ ++ DK TG+P+GF F+ YE++ S
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-S 299
Query: 366 TILAVDNLNSIKILGRTLRV 425
+ A + I I G+ + V
Sbjct: 300 AVEATMSQPYITIHGKPVEV 319
Score = 50.8 bits (116), Expect = 1e-07
Identities = 18/56 (32%), Positives = 38/56 (67%)
Frame = +3
Query: 195 KDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQR 362
++ +F+GGL ++ T+ + F Q+GE+++ ++RD TTG+ +GF FL +++ +
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 58.8 bits (136), Expect = 5e-10
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FVG +PYD++E + +F+Q G + +V D TG KG+ F + D +T +AV L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 390 NSIKILGRTLRVD 428
N+ ++ R +RV+
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 55.2 bits (127), Expect = 6e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +3
Query: 186 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRS 365
D YK +F+ L YD E D+ F++YG I I +VR+K TGK G+AF+ +E +R
Sbjct: 97 DPYKT---MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERD 153
Query: 366 TILAVDNLNSIKILGRTLRVD 428
+A + + GR + VD
Sbjct: 154 LKVAYKASAGLMLNGRRIVVD 174
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FV G+ + E ++ +FS++G + ++ ++R+ T +GF FL + A+DNL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 390 NSIKILGRTLRVDHCEQ 440
NS + GR L V ++
Sbjct: 163 NSQEFYGRVLNVQKAKR 179
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 51.6 bits (118), Expect = 7e-08
Identities = 24/77 (31%), Positives = 45/77 (58%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+++ L ++TE + +F Q+GEI ++++V+D+ KP+GF F+ Y + AVD L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 390 NSIKILGRTLRVDHCEQ 440
N + G+ L V ++
Sbjct: 322 NDKEYKGKKLYVGRAQK 338
Score = 44.8 bits (101), Expect = 8e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +3
Query: 201 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAV 380
SA ++VG L +TE + +F+ G + +I + RD T + G+A++ + + A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 381 DNLNSIKILGRTLRV 425
D LN I GR R+
Sbjct: 139 DELNYTLIKGRPCRI 153
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+F+ L ++ + + FS +G I + ++ D+ GK KGF F+CY AV +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 390 NSIKILGRTLRVDHCEQYKVPNAHM 464
N + G+ L V ++ +V + +
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQL 449
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 49.6 bits (113), Expect = 3e-07
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+F+ L Y E D+ +F +G++ ++M DK T PKGFA++ + D + A L
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 390 NSIKILGRTLRV 425
++ GR L V
Sbjct: 385 DAKPFQGRLLHV 396
Score = 41.5 bits (93), Expect = 8e-05
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = +3
Query: 135 LKLSERELGSSSKTSWHDQYKDSAW-IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDK 311
+KLS + + ++++ D K I + LP++ T+ DV + YG++ ++ V K
Sbjct: 697 IKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVR-VPKK 755
Query: 312 TTGKPKGFAFLCYEDQRSTILAVDNLNSIKILGRTLRVDHCEQYKVPNAHMSKIDEVTAA 491
+GFAF + R A+ L + +LGR L + + + + + I+++
Sbjct: 756 FDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYASNATMDDMQHA-IEKMAKE 814
Query: 492 ITMEGCAP 515
E AP
Sbjct: 815 ANAEAAAP 822
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.2 bits (112), Expect = 4e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Frame = +3
Query: 144 SERELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGK 323
S RE G S D DSA + V L D E ++ +F ++G I + + +DK TG+
Sbjct: 185 SGRESGDSMFKRERD---DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGR 241
Query: 324 PKGFAFLCYEDQRSTILAVDNLN 392
KGFAF+ Y D+ I A D L+
Sbjct: 242 AKGFAFVSYYDRDCAIKARDRLD 264
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.0 bits (109), Expect = 9e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 186 DQYKD-SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQR 362
DQ + S +FVG L ++ TE D+ F G+I +I + D +G+ KGF ++ + D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 363 STILAVDNLNSIKILGRTLRVD 428
S V+ +N I GR R+D
Sbjct: 419 SAKKCVE-MNGHFIAGRPCRLD 439
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/77 (25%), Positives = 42/77 (54%)
Frame = +3
Query: 198 DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILA 377
++ +FVG L +++ + + F +YG IV ++ D +G+ KG+ ++ +E + A
Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Query: 378 VDNLNSIKILGRTLRVD 428
V + +I GR + +D
Sbjct: 321 VAANGTKEIDGRMVNLD 337
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Frame = +3
Query: 186 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRS 365
D+ +D A I++G L +T+ + + Q G +VNI++ RD+ GF F + ++
Sbjct: 6 DRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 366 TILAVDNLNSIKILGRTLRVDHCEQ 440
A LN +K+ G+ +RV+ Q
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQ 89
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FVG L + E + FS G++V V G+ KG+ F+ Y+ + A++ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 390 NSIKILGRTLRVDH 431
N+ ++ + + V +
Sbjct: 161 NNQFLMNKPITVSY 174
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 46.0 bits (104), Expect = 4e-06
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +3
Query: 186 DQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRS 365
D K S ++VG L + TE + +FS+ GEI I M D+ T P GF F+ Y + +
Sbjct: 26 DAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQD 85
Query: 366 TILAVDNLNSIKILGRTLRVD 428
+ ++ ++ + R +R D
Sbjct: 86 ALDSLKYISRTSLDERIIRAD 106
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/81 (24%), Positives = 45/81 (55%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
I+VG LP+ ++ +++ +F+ G ++ + + T G+ KGF + +E++ +++ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQFENENDAASSIEKL 340
Query: 390 NSIKILGRTLRVDHCEQYKVP 452
N + GR L++ + Y P
Sbjct: 341 NGYRYGGRPLQLSYA-HYATP 360
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +3
Query: 195 KDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTIL 374
K ++VG LP+ E + FSQ+G ++ + M R++ TG K +AF+ +E +
Sbjct: 102 KKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANV 161
Query: 375 AVDNLNSIKILGRTLR 422
+ +++ + G+ L+
Sbjct: 162 VAETMHNYLLYGKLLQ 177
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.6 bits (98), Expect = 2e-05
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FVG L ++ E + F G I + +VRD T KGFA++ ++D A+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL-LL 330
Query: 390 NSIKI-LGRTLRVDHCEQYKVPNAHMSKI-DEVTAAITMEGCA 512
N K+ GRTLR+ + K + SK DE T T++G A
Sbjct: 331 NEKKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTR--TLQGRA 371
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.6 bits (98), Expect = 2e-05
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +3
Query: 165 SSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFL 344
SSK S ++ +D +FV L LT ++ F Q G + + +VRDK +G+ KG A++
Sbjct: 229 SSKLS--EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYV 286
Query: 345 --CYEDQRSTILAVDNLNSIKILGRTLRVDHCEQYK 446
C+ED +A L+ ++LG + V E K
Sbjct: 287 EFCHEDSVQAAIA---LSGKRLLGLPVIVQLTEAEK 319
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FVG L D+ + + FS+Y +V +VRD+ GK +GF F+ ++D + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 390 NSIKILGRTLRVDHCEQYKVPN 455
N I R +++ PN
Sbjct: 91 NGKYIGSRPVKLSRATSDVKPN 112
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 42.3 bits (95), Expect = 4e-05
Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 135 LKLSERELGSSSKTSWHDQYK-DSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDK 311
L+ + +L + ++ +D+ D+ ++VG + Y +T ++ F+ G + + ++ DK
Sbjct: 31 LRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDK 90
Query: 312 TTGKPKGFAFLCYED 356
TG PKGFA++ + +
Sbjct: 91 FTGHPKGFAYIEFSE 105
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 201 SAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAV 380
S+ +FVG L ++ T+ D+ F Q G+I + ++ + TGK KGF F+ + D + + A+
Sbjct: 227 SSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
Query: 381 D 383
+
Sbjct: 287 E 287
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.5 bits (93), Expect = 8e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
I V G+ + TE V +F+ +G + N+++ D+ TG KG+A + Y AVD
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 390 NSIKILGRTLRVD 428
N + +L L VD
Sbjct: 72 N-LSLLDEKLEVD 83
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/56 (28%), Positives = 36/56 (64%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILA 377
+FVG LP D + + F + G++ ++ + DKT+G+ KG+AF+ + + ++ +++
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVIS 149
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 40.3 bits (90), Expect = 2e-04
Identities = 12/57 (21%), Positives = 36/57 (63%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAV 380
+++ GLP + ++ +++ +++G++ + + D T KG+ F C+E+++S ++ +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICI 354
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FV L + D+ +FS++G+I++ ++RDK TG +AF+ ++++ S A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 390 NSIKILGRTLRVD 428
++ I + VD
Sbjct: 306 QNVLIDDSRIHVD 318
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FV L + + D+ FS G I + +V + TG+ +G+ F+ + A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 390 NSIKILGRTLRVD 428
+ K+ GR LR+D
Sbjct: 67 KNKKLHGRILRLD 79
Score = 32.3 bits (70), Expect = 0.047
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 129 NVLKLSERELGSSSKTSWHDQYKDSAW----IFVGGLPYDLTEGDVICVFSQYGEIVNIN 296
NV + + SS K S + + +D+ +FV L ++ TE ++ F Q+G +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 297 MVRDKTTGKPKGFAFLCYEDQR 362
+V+D T + G F+ + ++
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEK 329
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +3
Query: 204 AWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVD 383
A + VG L +TE + F +GEI+++ + R K + +AF+ +++ A++
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAME 64
Query: 384 NLNSIKILGRTLRV 425
N+N + R +RV
Sbjct: 65 NMNYSILCDRCIRV 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.009
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +3
Query: 129 NVLKLSERELGSSSKTSWHDQYKDSA--WIFVGGLPYDLTEGDVICVFSQYGEIVNINMV 302
NV+ +S +G S Q+ D+A +FVGGL ++E ++ +F +GEIV + +
Sbjct: 276 NVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI- 334
Query: 303 RDKTTGKPKGFAFLCYEDQRSTILAVDNLNSIKILGRTLRV 425
KG F+ + +++S +A++ L + +R+
Sbjct: 335 -----PPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRL 370
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.020
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 162 SSSKTSWHDQYKD-SAWIFVGGLPYDLTEGDVICVFSQYGEIVNI 293
++SK S QY+D S+ I+VG + L++ ++I FS+YG++ +I
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.3 bits (70), Expect = 0.047
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 264 FSQYGEIVNINMVRD---KTTGKPKGFAFLCYEDQRSTILAVDNLNSIKILGRTL 419
FS YG +++I + R + +G G F+ Y D RS +A++ + K RT+
Sbjct: 448 FSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTI 502
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 31.9 bits (69), Expect = 0.062
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 231 YDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNLNS 395
+D D+ C FS+YGE+ + +V D G ++ ++ + S A+D+LNS
Sbjct: 73 FDAFYEDMFCEFSKYGEVEQL-VVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNS 126
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.062
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTG 320
+FVGGL +L+E D+ F +G I+NI + K G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCG 335
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.1 bits (67), Expect = 0.11
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
I V L ++T+ + +F YG I +I M K + KG+ ++ Y AVD +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 390 NSIKILGRTLRV 425
N+ ++ G L V
Sbjct: 161 NNAELDGEELFV 172
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
+FVG +P T D++ F YG+I++ ++ GF F+ ED R V++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 390 NSIKILGRTLRVD 428
+ +G + V+
Sbjct: 58 QGKEFMGSRIVVE 70
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.0
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Frame = +3
Query: 63 FNSLNREP*V--KPVIMNPMTNVKNVLKLSERELGSSSKTSWHDQYKDS------AWIFV 218
FN +++ P V P + NP+ + + K S R S +T +D ++S +FV
Sbjct: 41 FNGVSKPPLVVRDPRLKNPIY-ARGIPK-SGRPFLKSLQTINYDYNENSLGPEPPTQVFV 98
Query: 219 GGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTI--------L 374
+ +T + F +GE+ ++++ + TG G + + D+RS+I +
Sbjct: 99 SNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF-DKRSSISVAAHSAKI 157
Query: 375 AVDNLNSIKILGRTLRV 425
AV N ++ G+ L V
Sbjct: 158 AVQQANGLRFSGKPLSV 174
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 90 VKPVIMNPMTNVKNVLKLSERELGSSSKTSWH-DQYKDSAWIFVGGLPYDLTEGDVI 257
+K +++P + VL L+ + W +++ ++ ++ G LPY+ E DV+
Sbjct: 587 IKDELISPKKEIDEVLALAPK---------WRINEFDETGSVYYGALPYNYPEDDVL 634
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 129 NVLKLSERELGSSSKTSWHDQYK 197
N+LK ER + +SS W+++YK
Sbjct: 118 NILKFVERHIITSSPIEWNNEYK 140
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 393 YSDCQLLKLLISDPHSTKMQILLVSQLFYLLPCLYLQFHHTEKI 262
YS CQL LL+ D I + + +L ++QF H +I
Sbjct: 1452 YSPCQLSLLLLMDILPNPSIITVTDDVATILHAAFIQFDHYSRI 1495
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 90 VKPVIMNPMTNVKNVLKLSERELGSSSKTSWHDQYKDSA 206
V PV + P +N N + R S+ SW DQ+ + A
Sbjct: 123 VHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVA 161
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +3
Query: 264 FSQYGEIVNINMVRDKTTGKP----KGFAFLCYEDQRSTI 371
F + G++V I+ T KP G+AF+CY ++ ST+
Sbjct: 188 FYENGKLVEIDGKDLMETAKPYFIYPGYAFVCYPNRDSTV 227
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 165 SSKTSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAF 341
+S S H + I G P L E + +++ ++ + ++R+K T K + FAF
Sbjct: 59 NSPLSRHIGVPNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAF 117
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 4.1
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = -1
Query: 328 FGFP---VVLSLTMFIFTISPY*ENTHITSPSVKSYGSPPTNIHALSLY*SCQEVFELLP 158
FG P VVL T+++ + I SP + YG P NI +L+ Q L
Sbjct: 70 FGEPETLVVLGATLYVIGVML---GPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSV 126
Query: 157 NSRSLSFKTFFTFVIGFIMTGLTHGS 80
N FF+ G + G+ GS
Sbjct: 127 NLAMFVVFRFFSGFFGSVGLGIGAGS 152
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 219 GGLPYDLTEGDVICVFSQYGEIVNINMV 302
GGL D T+ + C F Y E VN +M+
Sbjct: 664 GGLTPDPTKDSIECCFWAYQEDVNSSMI 691
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIV-NIN------MVRDKTTGKPKGFAFLCYEDQRST 368
+++ GLP D+T ++ VF + G I NI+ + G PKG A + + S
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESV 171
Query: 369 ILA 377
LA
Sbjct: 172 ELA 174
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 210 IFVGGLPYDLTEGDVICVFSQYGEIVNINMVRDKTTGKPKGFAFLCYEDQRSTILAVDNL 389
I++G LT + F ++GEI +N R+K AF+ + S I A+D +
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNC------AFVNFTSLASAINAIDRI 469
Query: 390 NSIK 401
K
Sbjct: 470 KQKK 473
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 326 WFPSCFISYHVYIYNFTILRKYTYNISFSQ 237
W P I Y +Y + +L Y + I+FS+
Sbjct: 584 WLPDLSILYKLYSESGALLNLYDWYIAFSE 613
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 317 SCFISYHVYIYNFTILRKYTYNISFSQIIWKSTNKYPCTVL 195
S F SY IYN + + QI K++ ++PC++L
Sbjct: 501 SWFASYDKGIYNLLFGMASSESFINGQIAEKNSFQFPCSIL 541
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 105 MNPMTNVKNVLKLSERELGSSSKTSWHDQYKDSAWIFVGGLPYDLTEG 248
+NP TNV V ++S ++G + D Y + GL D G
Sbjct: 589 INPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTG 636
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 75 NREP*VKPVIMNPMTNVKNVLKLSERELGSSSKTSWHDQYKDSA 206
NR P PVI N N+ NV S S + + QY +A
Sbjct: 527 NRRPISFPVISNMQPNITNVRSASAPLCSSPVPSRRYSQYATNA 570
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 524 WGNWSTSFHRYCSCDFINFAHVC 456
WG + +FH +C ++N +VC
Sbjct: 71 WGTCNHAFHFHCISRWLNTRNVC 93
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 132 VLKLS---ERELGSSSKTS-WHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEIVNINM 299
++KLS ER +G S H DS +F+G + + + C F+ G+ + +
Sbjct: 147 IIKLSPKEERNIGIGKDFSILHSSRLDSMCLFLGPARFVNHDCNANCRFNTSGKRIWLRC 206
Query: 300 VRDKTTGK 323
VRD G+
Sbjct: 207 VRDIKPGE 214
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 332 SFWFPSCFISYHVYIYNFTILRKYTYNISFSQIIWKSTNKYPCTV 198
S F +CF ++++ + Y Q+ W S NKY C +
Sbjct: 3 SISFLNCFFLVFLFLFFSDVHGSYNGLGLKPQMGWNSWNKYACDI 47
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.5
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Frame = +3
Query: 33 SNY-LXETLNNFNSLNREP*VKPVIMNPMTNVKNVLKLSERELGSSSKTSWHDQYKDSAW 209
SNY E L + L+ P K +++ +N +S+ ++ +S K + D +
Sbjct: 90 SNYDPFENLEILHQLSNTPRDKDAVIHDKIE-ENKRPISQPQVSASEKVTLKDLSLEPHQ 148
Query: 210 IFVGGLP-YDLTEGDVICVFSQYGEIVNINMVRDKTTGKP--KGFAFLCYEDQRSTILAV 380
LP ++ + F + EI N+N +DK + + L + D +S LA+
Sbjct: 149 PV--SLPAFENIGSETSIPFENHNEITNMNTAKDKLSSNEMYEKLRDLGFSDDQSR-LAL 205
Query: 381 DNLNSIK 401
+N S++
Sbjct: 206 ENSGSLE 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,916
Number of Sequences: 5004
Number of extensions: 44439
Number of successful extensions: 193
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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