Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_G07
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 52 5e-08
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.51
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 1.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 3.6
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 6.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 8.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 24 8.2
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 51.6 bits (118), Expect = 5e-08
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +1
Query: 292 ERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVXQV 414
+R +RI RA+QLS++ ILPK EWTK EED YL P++ +V
Sbjct: 65 DRVYRIRRAMQLSIENKILPKSEWTKPEEDYHYLRPVLAEV 105
Score = 33.5 bits (73), Expect = 0.013
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 186 NLSGFNKYGLLRDD-CLHETPDVTEALRRLP 275
+LSG+ KYGL DD L E D +AL RLP
Sbjct: 29 HLSGYRKYGLRYDDLMLEENDDTQKALSRLP 59
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.51
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 391
STP TS P T T+ VPY S+P +Y S + P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT 528
Score = 28.3 bits (60), Expect = 0.51
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 391
STP TS P T T+ VPY S+P +Y S + P T
Sbjct: 542 STPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT 587
Score = 27.1 bits (57), Expect = 1.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 391
STP TS P T T+ VPY S+P + IPYT
Sbjct: 437 STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 STPQTSIPXLLTRETSVLYVPY-SSPCKKQSYLKKSGQNMKKIPYT 391
STP TS P T T+ +PY S+P + +PYT
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYT 505
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 131 HHGSCSKSHFIDSQIYDFNVILT 63
HHGS SK H I Q+ ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 191 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNS 45
K + P ++ +T N + + SH GS +KSH F ++D N ++ N+
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNN 368
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 3.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 174 KWAYNLSGFNKYGLLRDD 227
KW + + F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 6.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -3
Query: 282 HGMEVCGVLQLHQEFHASNHPV 217
HG VC L+ H N P+
Sbjct: 435 HGQTVCNACGLYARLHGHNRPI 456
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 406 QQLGLSIGNLLHILSTLL*VGLFFAWRAVWHVQYGSFSR 290
++ G + L H +S GL F + A+W ++ SFS+
Sbjct: 1605 KRYGAVLAALAHAVSVF---GLVFTFEALWFLEAWSFSK 1640
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 294 EKLPYCTCHTALHAKNN 344
E +PY C+TA KN+
Sbjct: 998 ENIPYALCYTAAQLKNS 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,269
Number of Sequences: 5004
Number of extensions: 33430
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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