Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_G07
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical ...    42   1e-04
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   1.8  
Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical p...    26   9.5  

>AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical
           protein T02H6.11 protein.
          Length = 130

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +1

Query: 277 PMXVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVXQV 414
           P   D+R  R+ RA  L++    LPK EWT+++++S YL P + ++
Sbjct: 63  PHVFDQRKIRLSRAHTLALHGEKLPKAEWTQWDQESWYLKPYLDEI 108



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
 Frame = +3

Query: 159 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHXC*REKLPYCTCHT 323
           + +L K+A+ NL G  +YGL   D   E  P+VTEALRRL     H   + K+     HT
Sbjct: 19  ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78

Query: 324 -ALHAKNNP 347
            ALH +  P
Sbjct: 79  LALHGEKLP 87


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 374 SYFVHSSLGRIVFCMESCMARTIRKFLSSTXMGWKSAECFSY--IRSFMQAIIP*QTIFI 201
           +Y++   +    F M   + R+I K  +S  + +K +ECFSY  I  F++ ++      +
Sbjct: 74  NYYIFHDI-YFAFTMNWSLYRSIEKSNNSCGIMFKGSECFSYYVIGIFVRVLLLTSQFAV 132

Query: 200 ESRKIVGPFAEAVTSVNS 147
              K++  F      +NS
Sbjct: 133 TIEKLIVTFLPNSDLINS 150


>Z99279-1|CAB16496.4|  598|Caenorhabditis elegans Hypothetical
           protein Y57G11A.1a protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 171 SKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHXC*REKLPYCTCHTALHAKN 341
           +K  Y    F  +GLL         D  +ALR   +H C +    YC  H  L  +N
Sbjct: 512 TKNVYRAEQFQCFGLLYHVNCFRCIDCKQALRVEKAHRCQQSGDLYCRVHFKLMEEN 568


>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 101 IDSQIYDFNVILTQTTRNSQYLFVNVRRKKSXD 3
           +D    DFNVIL  TT    Y  + V R    D
Sbjct: 10  VDDVKDDFNVILVSTTMKCHYEVLEVERDADDD 42


>U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical
           protein C32D5.12 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 350 GRIVFCMESCMARTIRKFLSS 288
           G IVFCM+   A +IR F  S
Sbjct: 239 GEIVFCMDENCAHSIRDFFES 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,363,408
Number of Sequences: 27780
Number of extensions: 178451
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)