Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_G03
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   2.6  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   4.6  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.1  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 339 FPAAGLTGCGFCSCSFGSRGCRFGG 265
           FP  G  G GF   S+ S+G   GG
Sbjct: 441 FPGGGFPGGGFPGGSYNSQGFGMGG 465


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 1   CLCHDATEEATR 36
           C CHDAT E TR
Sbjct: 427 CTCHDATYEYTR 438


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +2

Query: 140 KLY*TCVSQNTGTCPESSCACPEISCACPETSCA--CP 247
           KL  TC    TG   E+     EI CA   T+C   CP
Sbjct: 172 KLSQTCRLALTGNISEAKAFIVEIMCAGVVTNCVRWCP 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,898
Number of Sequences: 5004
Number of extensions: 8170
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)