Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F19
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   147   6e-37
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   147   6e-37
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   0.81 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.7  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.5  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    24   9.9  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  147 bits (357), Expect = 6e-37
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +1

Query: 172 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXN 351
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +  +DG ++YFEDNAGVI N
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 352 NXGEMKGSAITGPVAKECADLWPR 423
             GEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +3

Query: 99  AVINCADNTGAKNLYVIAVQG 161
           A++NCADN+GAKNLY+++V G
Sbjct: 23  AIMNCADNSGAKNLYIVSVFG 43


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  147 bits (357), Expect = 6e-37
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +1

Query: 172 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXN 351
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +  +DG ++YFEDNAGVI N
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 352 NXGEMKGSAITGPVAKECADLWPR 423
             GEMKGSAITGPVAKECADLWPR
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +3

Query: 99  AVINCADNTGAKNLYVIAVQG 161
           A++NCADN+GAKNLY+++V G
Sbjct: 23  AIMNCADNSGAKNLYIVSVFG 43


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 87   RPREIRNFAPAGTTTSSLRHFVVSK 13
            RP+E  NF  AG  T+ L++++VSK
Sbjct: 1346 RPKEEINFQEAGVLTAPLKNWLVSK 1370


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 113 RRQHRGKESVCDRCPRLSKVA*TDCRR 193
           RR H+    +C RC     +   DCR+
Sbjct: 776 RRLHKAAREICLRCANAISMIVDDCRK 802


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 374 EPFISPLLLXMTPALSSKYINXPS 303
           +P+  P+L    P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -1

Query: 345 YDTRIVLKVYKXSITXXERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 178
           Y+TR + K     +   E  PLP       LF E  F    C    +   G  QS+
Sbjct: 11  YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,571
Number of Sequences: 5004
Number of extensions: 35208
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)