Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F19
         (465 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   168   3e-42
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   154   6e-38

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  168 bits (409), Expect = 3e-42
 Identities = 79/87 (90%), Positives = 80/87 (91%)
 Frame = +1

Query: 163 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGV 342
           I+GRLNRLPAAG GDM VATVKKGKPELRKKVMPAVVIRQRKPF  RDG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 104

Query: 343 IXNNXGEMKGSAITGPVAKECADLWPR 423
           I NN GEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 93  LGAVINCADNTGAKNLYVIAVQG 161
           +GAV+NCADNTGAKNLYVIAV G
Sbjct: 22  VGAVMNCADNTGAKNLYVIAVHG 44



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 56  AGAKFRISLGLPAGS 100
           AG KFRISLGLP G+
Sbjct: 10  AGGKFRISLGLPVGA 24


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  154 bits (373), Expect = 6e-38
 Identities = 73/87 (83%), Positives = 74/87 (85%)
 Frame = +1

Query: 163 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGV 342
           I+GRLNRLPAAG GDM VATVKKGKPELRKKV      RQRKPF  RDG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGV 104

Query: 343 IXNNXGEMKGSAITGPVAKECADLWPR 423
           I NN GEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +3

Query: 93  LGAVINCADNTGAKNLYVIAVQG 161
           +GAV+NCADNTGAKNLYVIAV G
Sbjct: 22  VGAVMNCADNTGAKNLYVIAVHG 44



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 56  AGAKFRISLGLPAGS 100
           AG KFRISLGLP G+
Sbjct: 10  AGGKFRISLGLPVGA 24


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,081,754
Number of Sequences: 53049
Number of extensions: 466772
Number of successful extensions: 1043
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)