Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F14
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   0.56 
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   5.2  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    23   9.0  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    23   9.0  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 142 YL*VHSCIKDVSFENLLRTIILFSCNVSATE 50
           Y  + S IKD  F  LLRT+ +++    ATE
Sbjct: 374 YRTIDSSIKDQPFSRLLRTLQIYTSRKEATE 404


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 133 VHSCIKDVSFENLLRTIILFSCNVSATEISDFNSSKFIL 17
           +  C+KDVSF+   + +I  SC+    +I   +  + +L
Sbjct: 154 ITKCVKDVSFDEFRKDVI--SCSTIENKIMAISFCRKVL 190


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   KYRQKYEFRRIKIRNFSRRYITGK*YNC 88
           K R    F  ++I+NF + Y TG   NC
Sbjct: 456 KIRSLTTFEYLEIKNFQKIYFTGS-ENC 482


>SPAC24H6.02c |||TIM23 translocase complex subunit
          Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 5  KYRQKYEFRRIKIRNFSRRYITGK*YNCS 91
          +Y QK+  R ++++NFS +        CS
Sbjct: 6  RYTQKFCLRNLQLKNFSNKVKVSSLLFCS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,796
Number of Sequences: 5004
Number of extensions: 10862
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)