Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F12
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   6e-26
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.0  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   7.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (268), Expect = 6e-26
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +1

Query: 172 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 351
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 352 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 450
           KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +2

Query: 458 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPALI 634
           N+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A+ 
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVE 161

Query: 635 SA 640
            A
Sbjct: 162 EA 163


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -2

Query: 384  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 265
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 IHSS*N*GRRIEPSICPNDWNCCRSPXDATSLLNHCKSMFKE 497
           +H S N G  ++P +  N WN      D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 LMDISTRIGKDLLKLGLTSQLDDTAES 256
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,253
Number of Sequences: 5004
Number of extensions: 52157
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)