Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F11
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    26   4.0  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   6.9  
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu...    25   9.1  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   9.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.1  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   9.1  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 533 LMAXHYYRNLSQWNQMEEFYTNVHVCILGGML 628
           L+  H Y NLSQ   +E+F   +     GG L
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFL 55


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 125 FGWVRPGSLNHKNFRTLVKIGRRTPIRTNLH 217
           FG   PG ++ + +R +VKI R   I   +H
Sbjct: 200 FGARTPGGVSEELYRKMVKIARANNIGITMH 230


>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
           Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 163 FQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 267
           + D GE+   D   NE     G+K+    PV+  K
Sbjct: 143 YSDEGEEARKDKRKNESEVGAGKKKAKAKPVDMDK 177


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 193 DADSNEPASRTGRKRVSKAPVNNTKK 270
           D D N   S + R   S APVNN+++
Sbjct: 344 DVDENISTSSSPRSPASLAPVNNSER 369


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 165 KFLWFSDPGLTHPNLLRLTLKIYVFSFSXWVFVQKQSTIARQTHAN 28
           KFL+F  P ++ P+    +L  +   F  W F    S   +  H N
Sbjct: 214 KFLFFFRPDVSFPSYFLGSLIAHEIHFLPWDFNMLCSNSVQSAHTN 259


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 590 KTLPFDSIGINFCNNAXPSIFHKFSSSSFDITVXPSHFTSDXSK-TKFPEWK 438
           KTLP  S G      + P      S+ S  +   PS+ ++  SK T +P+++
Sbjct: 115 KTLPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQ 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,066
Number of Sequences: 5004
Number of extensions: 45903
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)