Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F08
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.8  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   4.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.1  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   4.1  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.1  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 185 KXKRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 286
           + ++R I C  L PC   ++S   C  P++PI +
Sbjct: 21  RCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 646 SNKXKTITLFITF*WNLWLELSLKIILKKRQKFIE 542
           ++K K     +   WN+WL    KI  K++ KF E
Sbjct: 356 NSKYKDSMFTVKTNWNMWLSQVQKINEKEKDKFYE 390


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 272 YLEH-SRATHYEDEESKEP 219
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 268 WNTAEPHTTKMKRARSQGATGYWSSFXLGSFGYIPPHCDVFTGD 137
           W+  EP     +R   + A   W    + + GY P + D F  D
Sbjct: 164 WDKGEPIWVNAERNNVRSAVHMWPGNEVENHGYRPTYSDGFNFD 207


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 203 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 307
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 634 KTITLFITF*WNLWLELSLKI 572
           K+  L   F W+ WLELSL I
Sbjct: 197 KSCVLKAPFFWSAWLELSLSI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,890
Number of Sequences: 5004
Number of extensions: 53183
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)