Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F08
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       33   0.20 
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974...    30   1.8  
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    27   9.7  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    27   9.7  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 165 GMYPKLPRXKEDQYPVAPWLLALFIFVVCGS 257
           G  P+    K + YPV P +L  FIFVV GS
Sbjct: 23  GSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>05_03_0318 -
           12292969-12293222,12293305-12293898,12297102-12297415,
           12297712-12297893,12297960-12298187,12298234-12298698,
           12299393-12299443
          Length = 695

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 260 CVPDNPINKTSLNHEDNWRTAIENTIK*QHYPSKV-RHNLHQHLFVDMRE 406
           CV     +  S+   D W+T + N  + + Y S + RH+L Q  F+++ E
Sbjct: 206 CVEGKAKDARSITSGDGWKTRVLNRKEVRSYTSDLKRHDLRQQDFLNLEE 255


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 146 KNITMRGNVPKTTKXKRRPISCGTL 220
           KNIT RG+VP+TT  K      G L
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPL 41



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 165 GMYPKLPRXKEDQYPVAPWLLALFIFV 245
           G  P+    K + YPV P +L  FIFV
Sbjct: 23  GSVPETTVKKGNDYPVGPLVLGFFIFV 49


>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 220 QGATGYWSSFXLGSFGYIPPHCDVFTGDLV 131
           +G T Y S+  +G+FGY+ P     TG L+
Sbjct: 458 EGCTNYLSTRVMGTFGYVAPEY-AMTGHLL 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,079,811
Number of Sequences: 37544
Number of extensions: 321883
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)