Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F08
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    57   9e-09
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    52   3e-07
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 165 GMYPKLPRXKEDQYPVAPWLLALFIFVVCGSAVFQIIQSIRL 290
           G   K  +  ED+YP APWL+ LF+FVVCGSAVF+II+ +++
Sbjct: 22  GNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRYVKM 63



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +2

Query: 101 MAPKQRMRIANEIASKNITMRGNVPKTTK 187
           MAPKQRM +AN+  SKN+  RGNV K+ K
Sbjct: 1   MAPKQRMTLANKQFSKNVNNRGNVAKSLK 29


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +3

Query: 105 PLSRECVSPTRSPVKTSQ*GGMYPKLPRXKEDQYPVAPWLLALFIFVVCGSAVFQIIQSI 284
           P  R  V+  +     +Q G + PK  +  E ++P + WL+ LFIFVVCGSA+F++I+ I
Sbjct: 3   PKQRMAVANAQFSKNVTQRGNV-PKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRYI 61

Query: 285 RL 290
           ++
Sbjct: 62  KV 63



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +2

Query: 101 MAPKQRMRIANEIASKNITMRGNVPKTTK 187
           MAPKQRM +AN   SKN+T RGNVPK  K
Sbjct: 1   MAPKQRMAVANAQFSKNVTQRGNVPKGNK 29


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 620 IHYI-LMEFVA*VVFKNYIEKETKIHRKFYNRYLNVPNNLMYRR-PVLTPVSVKETSSHD 447
           +HYI +++FV   +F++YI+   K     YN YL +     +R   +++  +  +TS  D
Sbjct: 256 MHYIKILKFVLIAIFQSYIQFLKKTKYILYNCYLTILTFKNFREFEIVSSYTTIQTSKID 315

Query: 446 C-TVKGTNGRLR 414
             T K   G+ R
Sbjct: 316 SKTFKKLLGKFR 327


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 257 CCVPD--NPINKTSLNHEDNWRTA 322
           CC P+  N +N  S+ H  NWRTA
Sbjct: 136 CCFPEVVNYLNTHSVGHVKNWRTA 159


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 242 RSVWLCCVPDNPINKTSLNHEDNWRT 319
           RS+W CC+P    N  S   +  WRT
Sbjct: 275 RSMWSCCIPTTYYNNYSNALKIAWRT 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,453
Number of Sequences: 27780
Number of extensions: 295020
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)