Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F07
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    59   4e-10
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    32   0.038
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.089
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.20 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   1.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   1.9  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   1.9  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   1.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   4.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   4.4  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    25   5.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.8  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   5.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   5.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   5.8  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 32/92 (34%), Positives = 52/92 (56%)
 Frame = +2

Query: 194 ELLMEIPNHDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAP 373
           +L+ +I    A+ +RS T++T+ VL+A   L V+G    G + +D+D A ++G+ V N+P
Sbjct: 90  DLVEKIKGVHAIGIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSP 149

Query: 374 GANALSACXLTCTLMLVLARHVVPASTALXAG 469
            AN+ S   L    ++ LAR V   S  L  G
Sbjct: 150 YANSRSVAELVIGYIISLARQVGDRSLELHRG 181


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 32.3 bits (70), Expect = 0.038
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 281 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACXLTCTLMLVLARHVVPASTAL 460
           KL V G   AG +N+DVD A + GV V N P         +   L +   R    A  +L
Sbjct: 85  KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142

Query: 461 XAG 469
             G
Sbjct: 143 RLG 145


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.1 bits (67), Expect = 0.089
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 2   ESVAARRSEEAHTXIKLNNDSTTKPRWSWTLSRF*SSTGLAPSVPNSST 148
           ESVAA R+  A   +  NND  T P+ +  +S F S  G + + P   T
Sbjct: 414 ESVAALRARFAKANVSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFT 462


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 369 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           +L TP TP +P  STS  S P P  PT+ S T  +++ L T     TT  S
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPLPTTSTSCTTSTS 234



 Score = 29.9 bits (64), Expect = 0.20
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 369 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           +L TP TP +P  STS  S P P  PT+ S T  +++ L T     TT  S
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPLPTTSTSCTTSTS 290



 Score = 29.9 bits (64), Expect = 0.20
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 372 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           G   TP TP +P  STS  STP P  P + S T  S++ L++     TT  S
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTS 398



 Score = 29.5 bits (63), Expect = 0.27
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 369 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           +L TP TP +P  STS  S P P  PT+ S T  ++  L T     TT  S
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSNPLPTTSTSCTTSTS 177



 Score = 28.7 bits (61), Expect = 0.47
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 372 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           G   TP TP +P  STS  STP P  P + S T  S++ L +     TT  S
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLPSTSTSCTTSTS 344



 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -3

Query: 387 SALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           S L     +T TP      T+  S P  + P T S    S+++ VT     TT  +
Sbjct: 537 SVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCT 592



 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 363 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 220
           +T TP      T+  S P  + P T S    S+++ VT     TT  +
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCT 533


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 342 PAESTSMLSTPAPARPTTFSFTPASNTS 259
           P+  ++   +PAP    T S +PA+NTS
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNTS 152


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 393 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTR 226
           ++SAL+  + + PT    + S    S PAP  P + S +P  ++  V       +R
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASR 284


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 KEVLD-AGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGA 379
           KE++D     +K +   GAG + +DV +   +G+ V + P A
Sbjct: 71  KEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKA 112


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 IVDGVGAKCAELLNAYGIATTTKAKISKARTSYGDTQPRRSGCAFSNSS 252
           I D    KC EL+N Y        K  +AR +    +    G AF+N+S
Sbjct: 254 ITDACAVKCIELVNKYLKRAVDNGKDEEARDNMAYAE-FLGGMAFNNAS 301


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 242 ATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAP 373
           +TQ+    +     +K + +  A +D+I  DS    G G +N+P
Sbjct: 678 STQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVNSP 721


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 363 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLV 253
           +TPTP   A  T+   + A    +T S T  + TS+V
Sbjct: 34  VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIV 70


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -3

Query: 399 SHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASN 265
           S + SA +P + ++ +  + +E +S L + + A P+T S TP+S+
Sbjct: 485 SSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSS 529


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 399 SHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 289
           S A+S   P  ++   P  PA  T M +   P RPT+
Sbjct: 119 SLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 393 ALSALAPGALITPTPFLPAESTSMLSTPA 307
           +LS + P +  +P+P   A STS+ S PA
Sbjct: 32  SLSEINPSSFQSPSPSPFASSTSLASKPA 60


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 435 WRARTNINVQVXSHALSALAPGALITPTPFL 343
           W+  TN  +QV ++ L  L P   +   PFL
Sbjct: 96  WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 296  GRAGAGVDNIDVDSAGKKGVGVINAPG 376
            G+A    +N  V+S GKKG  ++N  G
Sbjct: 1344 GKAERFSENAGVESIGKKGKNLLNESG 1370


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -3

Query: 366 LITPTPFLPAESTSMLSTPAPAR------PTTFSFTPASNTSLVT*VAERTTRAS 220
           LI PTP +   S + +  P+PA       P+  S  P+ ++SL + VA  + + S
Sbjct: 292 LIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -3

Query: 465 AFSAVEAGTTWRARTNINVQVXSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 286
           ++  V+  T      + +V +    LS + P +L        + S+S +ST   ++P+T 
Sbjct: 16  SYLVVDGATPRTFAPSASVSINYGTLSTVFP-SLYRRASTSSSSSSSSISTSHDSQPSTS 74

Query: 285 SFTPASNTS 259
           S +P+S ++
Sbjct: 75  SSSPSSTST 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,457
Number of Sequences: 5004
Number of extensions: 28010
Number of successful extensions: 109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)