Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori...    39   0.12 
UniRef50_A0UDV6 Cluster: Short-chain dehydrogenase/reductase SDR...    36   0.64 
UniRef50_P16818 Cluster: Uncharacterized protein UL61; n=1; Huma...    34   2.6  
UniRef50_UPI0001560453 Cluster: PREDICTED: similar to MGC50722 p...    34   3.4  
UniRef50_A6SFS5 Cluster: Putative uncharacterized protein; n=2; ...    34   3.4  
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera...    33   4.5  
UniRef50_Q8YLK5 Cluster: Alr5293 protein; n=4; Nostocaceae|Rep: ...    33   5.9  
UniRef50_Q9SKD8 Cluster: Expressed protein; n=14; Magnoliophyta|...    33   5.9  
UniRef50_Q9VDE9 Cluster: CG3421-PA; n=3; Drosophila melanogaster...    33   7.8  
UniRef50_Q5KJM2 Cluster: RNA binding protein, putative; n=2; Fil...    33   7.8  

>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx
           mori|Rep: Reverse transcriptase - Bombyx mori (Silk
           moth)
          Length = 1076

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -3

Query: 261 LQRPQPEITSGVVHGYRTVSLKAACVLA 178
           L+RPQ  +   V+ GYRTVS +AACVLA
Sbjct: 839 LRRPQRTVAIRVIRGYRTVSFEAACVLA 866



 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 167 PWGLEAEALVADCM*LGDLRSMG-NRPGKTEIGAGRLQSRRSL 42
           PW LEAE+L AD     +LR+ G  R  ++E+ A +  SRRS+
Sbjct: 870 PWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSV 912


>UniRef50_A0UDV6 Cluster: Short-chain dehydrogenase/reductase SDR;
           n=3; Burkholderia cepacia complex|Rep: Short-chain
           dehydrogenase/reductase SDR - Burkholderia multivorans
           ATCC 17616
          Length = 581

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 26/88 (29%), Positives = 43/88 (48%)
 Frame = -2

Query: 331 LPAVYEGCAWRSMWRHVLTRDNGVATSAA*DHVRGGSRVPHRLVKGGVRARRNAYPGAWR 152
           +P +Y   A  ++  ++L R  G   + + +  RG  RVP+   KGGV A   A    + 
Sbjct: 439 MPTLY---ACHAVLPYLLERGRGTIVNVSSNATRGIRRVPYSAAKGGVNALTQALAMEY- 494

Query: 151 PRHSLRIVCN*VTSAPWGTVPARRKLER 68
             H++R+    V +AP GT    R++ R
Sbjct: 495 GEHNIRV----VATAPGGTTAPPRRVPR 518


>UniRef50_P16818 Cluster: Uncharacterized protein UL61; n=1; Human
           herpesvirus 5 strain AD169|Rep: Uncharacterized protein
           UL61 - Human cytomegalovirus (strain AD169) (HHV-5)
           (Human herpesvirus 5)
          Length = 431

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
 Frame = +1

Query: 61  SLPAPISVLPGRFPMERRS--PNY-IQSATSASASRPQGRRSGEHARRL*RDGAV----P 219
           +LP PI+V PGR P    S  P Y  +  T+A+ SR +  R G  A +  R+G +    P
Sbjct: 151 NLPGPIAVEPGRRPSPPPSTRPTYRRRRPTAATPSRKKKARRGPKASKAGREGELGGGSP 210

Query: 220 VNHPGRDL 243
           V H G  L
Sbjct: 211 VAHRGTSL 218


>UniRef50_UPI0001560453 Cluster: PREDICTED: similar to MGC50722
           protein; n=1; Equus caballus|Rep: PREDICTED: similar to
           MGC50722 protein - Equus caballus
          Length = 1130

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +2

Query: 2   ELPASSGR*DGKRQDYASIEASPLQFPSC---RDGSPWSGG 115
           +L  S GR  G RQD+A + A PL+ PSC    +  PWS G
Sbjct: 841 DLVPSGGR--GARQDWADVPAKPLRSPSCFPDDEMLPWSPG 879


>UniRef50_A6SFS5 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 495

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +1

Query: 94  RFPMERRSPNYIQSATSASASRPQGRRSGEHARRL*RDGAVPVNHPGRDLRLRTLQRRYR 273
           R     + PN I     AS S P    S  H  ++ R G +P     ++ ++ +  R   
Sbjct: 161 RIEQRSKEPNAISKKRKASLSSPTTSPSDRHQPKVSRSGPIPHQMTVKNRQVESTTRNSA 220

Query: 274 GSGRDATWTSRRSLR 318
           G+G + T     SLR
Sbjct: 221 GNGPNYTLDQSSSLR 235


>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
           Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
          Length = 1053

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 261 LQRPQPEITSGVVHGYRTVSLKAACVLA 178
           L RPQ  +   ++ GYRTVS  AAC LA
Sbjct: 816 LHRPQRTMAIRMIRGYRTVSYDAACTLA 843


>UniRef50_Q8YLK5 Cluster: Alr5293 protein; n=4; Nostocaceae|Rep:
           Alr5293 protein - Anabaena sp. (strain PCC 7120)
          Length = 471

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = -2

Query: 190 VRARRNAYPGAWRPRHSLRIVC---N*VTSAPWGTVPAR----RKLERGGFNRGVVLPLA 32
           + A R  +PG    ++SL + C     V +A  G++P      +  +RGG  RG ++P+ 
Sbjct: 23  ISAHRQIFPGWQCAKYSLFVACLLSMGVLTASCGSLPKETAEAQSQQRGGGERGGLVPVD 82

Query: 31  VSSARRRR 8
           V+ ARR R
Sbjct: 83  VAIARRER 90


>UniRef50_Q9SKD8 Cluster: Expressed protein; n=14;
           Magnoliophyta|Rep: Expressed protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 363

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 176 ERLPWGLEAEALVADCM*LGDLRSMGNRPG 87
           +++PW      L AD   LGDL ++GN PG
Sbjct: 293 DQIPWNFSLSDLTADLSNLGDLGALGNYPG 322


>UniRef50_Q9VDE9 Cluster: CG3421-PA; n=3; Drosophila
           melanogaster|Rep: CG3421-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 1330

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 SGEHARRL*RDGAVPVNHPGRDLRLRTLQRRYRGSGRD 288
           S  H  R   D  VPV+    +LRL +LQ++ RG G+D
Sbjct: 212 SSAHGYRRFNDSGVPVSGHPDNLRLGSLQKQQRGGGKD 249


>UniRef50_Q5KJM2 Cluster: RNA binding protein, putative; n=2;
           Filobasidiella neoformans|Rep: RNA binding protein,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 393

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +1

Query: 49  RLD*SLPAPISVLPGRFPMERRSPNYIQSATSASAS-RPQGRRSGEHARRL*RDGAVPVN 225
           R + S P P+     R    R SP Y + A SAS S  P+G R G  +R   R  A  V+
Sbjct: 268 RRERSPPVPVRKWGERGAPRRPSPEYGRGARSASRSVSPRGPRGGVRSRSPVRRRA-SVS 326

Query: 226 HPGRDLRLRTLQR-RYRGSGRDATWTSRRSLRILP 327
                +R R+  R R    GR  + +  RS   LP
Sbjct: 327 RSRSPVRRRSRSRARSYSRGRSVSMSRSRSRSPLP 361


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,758,665
Number of Sequences: 1657284
Number of extensions: 14696379
Number of successful extensions: 34453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34421
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)