Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    30   0.25 
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    27   1.8  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    26   4.1  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   5.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   5.4  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    25   9.5  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.5  

>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 79  SVLPGRFPMERRSPNYIQSATSASASRPQGRRSGEHARRL 198
           S++ GR P E  + ++IQ+    S +R +GRRS    ++L
Sbjct: 349 SIIRGRKPSEEEASHFIQTYLGPSNNRRRGRRSENPMQKL 388


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 167 PWGLEAEALVADCM*LGDLRSMGNRPGKTEIGAGRLQSRRSLAACRLICQ 18
           P G E +     C     ++  G +PGKT+I  G  + +    +C L  Q
Sbjct: 39  PLGQECKICSKPCTIFRWIKERGQKPGKTQICVGCARYKNCCQSCMLDLQ 88


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 491 LVKLSMGSRTSTFCQIDIFHFSFIY 565
           LVKLS+G+ +   C  D+FH SF+Y
Sbjct: 74  LVKLSLGAMS--LC--DVFHLSFLY 94


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 41  QDYASIEASPLQFPS 85
           +DY S+E SPLQF S
Sbjct: 115 EDYTSLEGSPLQFAS 129


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 PMERRSPNYIQSATSASASRPQGRRSGEHA 189
           P +R SP++  S T ++      RRS EH+
Sbjct: 503 PPQRTSPSFFVSPTESTRQSLDSRRSFEHS 532


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 475 VW*NKTLLNLPSWIISVTRTFESMMERRTG 386
           +W NK L    +W+ +V+  FE   ER TG
Sbjct: 774 LWKNKVLGTDLTWMKTVSEIFEYYAERTTG 803


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 515 YFPLTILLRERYTCLVKQNFIKLTKLDYI 429
           YFPLT L+ +R  CL       +  LD++
Sbjct: 165 YFPLTALIEDRIFCLHGGLSPSIDSLDHV 193


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 572 VNNKQKN*SFSHLDQIIVHLITSYRH 649
           ++N +K    S LD+++ HL+  Y+H
Sbjct: 343 LHNLEKFNLKSQLDKVVFHLVPDYKH 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,155
Number of Sequences: 5004
Number of extensions: 56055
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)