Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378     31   0.60 
12_01_0419 - 3316866-3318172,3318249-3318360                           28   5.6  
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    28   5.6  
09_06_0103 + 20873310-20873382,20873530-20873735                       28   7.4  
11_01_0271 + 2039100-2041760                                           27   9.8  
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307...    27   9.8  
04_01_0342 - 4457825-4460863                                           27   9.8  

>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
          Length = 477

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 148 SASRPQGRRSGEHARRL*RDGAVPVNHPGRDLR----LRTLQRRYRGSGR 285
           +ASR +GRRSG+      R G    +H  RD+R    + T Q  +RG G+
Sbjct: 81  AASRGRGRRSGDATSASSRHGGGHADHAVRDVRRGGNVSTQQHHHRGRGQ 130


>12_01_0419 - 3316866-3318172,3318249-3318360
          Length = 472

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
 Frame = -2

Query: 106 PWGTVPARRKLER-GGFNRGVV-------LPLAVSSARRRRQ 5
           P G  P RR+  R GGF  G+V       L LA ++ARRRRQ
Sbjct: 424 PRGQGPRRRRRRRRGGFPLGMVVGPAVILLALAAAAARRRRQ 465


>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 61  SLPAPISVLP-GRFPMERRSPNYIQSATSASASRPQGRRSGEHARR 195
           SL   +  LP GR P +RR P       S +A    GR  GE+AR+
Sbjct: 152 SLAESLRNLPSGRQPQQRRQPRSTTPFLSPTAHPIFGRELGENARK 197


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 348 LHRFLRCRQY--TKAAPGGPCGVTS*PAITALQ 256
           L R  RC QY  ++ A  G CG +S P+ TAL+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALK 77


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 368 ITLVRLGYTGSFVAGSIRRLRLEVHV 291
           + LV +G  G+F AGS R+++  V+V
Sbjct: 640 VILVLVGLMGAFAAGSCRKVKTSVYV 665


>06_01_0433 -
           3078576-3078780,3078797-3078951,3079782-3079821,
           3079957-3080009,3080091-3080199,3080324-3080448,
           3081112-3081201,3081280-3081342,3081453-3081544,
           3081641-3081722,3081913-3082086,3082183-3082264,
           3083100-3083224,3083312-3083389,3084047-3084402,
           3085311-3085608
          Length = 708

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 217 PVNHPGRDLRLRTLQRRYRGSGRDATWTSRRSLRILPATKEPV*P 351
           P   PGR LRL+ ++RR          +++R L   P  K+PV P
Sbjct: 17  PQVRPGRRLRLQRVRRRCVAELSRDGGSAQRPLAPAPLVKQPVLP 61


>04_01_0342 - 4457825-4460863
          Length = 1012

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
 Frame = +1

Query: 4   VACVVWQMRRQAARLRLD*SLPAPISVLPGRFPMERRSPNYIQSATSASASRPQGRRSGE 183
           V C  W+ RRQ  R   D  L  P  V+   F  +    ++  S    S SR +    G+
Sbjct: 66  VDCSRWKKRRQLQRAIAD-QLKLPQHVMD-LFDRQDEEDDF--SGVEES-SRAEVTDIGK 120

Query: 184 HARRL*RD-GAVPVNHPGRDLRLRTLQRR---YRGSGRDATWTSRRSLRILPATKEPV*P 351
              +  +D   + + H G D  + T +     Y  S     WT R  LR+ P   + V  
Sbjct: 121 EIYQTIKDLSCLLIFHNGSDDTVDTSKLGFPLYDWSDNKVLWTFRGRLRLNPKIADNVDS 180

Query: 352 NLTNVIF*NFEHPFSFPSL 408
           +  N+    + H +SF SL
Sbjct: 181 SHLNIYSHYYYHFYSFESL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,789
Number of Sequences: 37544
Number of extensions: 428517
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)