Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  PGRFPMERRSPNYIQSATSASASRP 162
           P RFP   RSP YI   +  SA +P
Sbjct: 156 PQRFPARERSPAYIPGRSIQSAEKP 180


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 31  RQAARLRLD*SLPA--PISVLPGRFPMERRSPNYIQ-SATSASASRPQGRRSGEHARRL 198
           R  A L  + ++PA  P+  +P     E +  N+I   AT  SAS PQ  R+ E  R++
Sbjct: 504 RTMAVLPTEYTIPATKPMKPMPTPAKYEIQEENFIAPKATEPSASEPQPTRASEKDRQV 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,902
Number of Sequences: 27780
Number of extensions: 328981
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)