Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_F03
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical ... 31 0.70
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 6.5
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 27 8.6
Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical pr... 27 8.6
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 27 8.6
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 27 8.6
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 8.6
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical
protein T05B4.13 protein.
Length = 156
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 323 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 198
N+ +RTC P+ TA+ S TAS S STC ++N SS L S
Sbjct: 87 NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -1
Query: 404 STQGDGVQLSVLAPXP*T-------RVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCS 246
STQ G Q ++ P P + +GA+ +S S T + SP+ +++ GS S S
Sbjct: 500 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTS 559
Query: 245 DMASTCI-TFNSSGLASGPNNA*RMTSLLL 159
AST S G P ++ ++ +L
Sbjct: 560 PAASTTSGEMTSQGSTQTPGSSVSTSAAIL 589
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -1
Query: 404 STQGDGVQLSVLAPXP*T-------RVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCS 246
STQ G Q ++ P P + +GA+ +S S T + SP+ +++ GS S S
Sbjct: 707 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTS 766
Query: 245 DMASTCI-TFNSSGLASGPNNA*RMTSLLL 159
AST S G P ++ ++ +L
Sbjct: 767 PAASTTSGEMTSQGSTQTPGSSVSTSAAIL 796
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -1
Query: 404 STQGDGVQLSVLAPXP*T-------RVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCS 246
STQ G Q ++ P P + +GA+ +S S T + SP+ +++ GS S S
Sbjct: 707 STQSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTS 766
Query: 245 DMASTCI-TFNSSGLASGPNNA*RMTSLLL 159
AST S G P ++ ++ +L
Sbjct: 767 PAASTTSGEMTSQGSTQTPGSSVSTSAAIL 796
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 130 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 252
+ EA A R+ K + ALL PDA PD N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 329 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 198
S NS S + DS + ++T S T + C D STC ++ ++G +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 579 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 493
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 579 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 493
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 579 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 493
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical
protein K01B6.3 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 570 SWAMQLCLWHYSTFSLFCPWVHLLHY 493
SWA+ +C+ STF+L C +LHY
Sbjct: 80 SWALLVCIIE-STFALICFLAVMLHY 104
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 579 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 493
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 579 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 493
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 59 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 175
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 59 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 175
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,274
Number of Sequences: 27780
Number of extensions: 246134
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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