Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_F02
(610 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 256 2e-67
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 140 3e-32
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 115 1e-24
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 102 6e-21
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 100 2e-20
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 100 2e-20
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 100 5e-20
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 96 5e-19
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 96 7e-19
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 96 7e-19
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 90 4e-17
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 89 6e-17
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 86 7e-16
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 85 9e-16
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 84 3e-15
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 83 7e-15
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 83 7e-15
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 81 2e-14
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 80 4e-14
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 80 5e-14
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 73 7e-12
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 71 2e-11
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 53 6e-06
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 50 4e-05
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 50 6e-05
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 46 5e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 41 0.020
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 39 0.081
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 38 0.14
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.19
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 38 0.25
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 36 0.57
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 36 0.75
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.99
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.99
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.99
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.3
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 2.3
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 34 3.0
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 33 5.3
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 32 9.3
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 256 bits (628), Expect = 2e-67
Identities = 125/152 (82%), Positives = 135/152 (88%)
Frame = +3
Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
RPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKDP+RLFEGNAL
Sbjct: 18 RPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNAL 77
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
LRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKS V
Sbjct: 78 LRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR 608
RKQVVNIPSFIVRLDS KHIDFSL+SP+GGGR
Sbjct: 138 RKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGR 169
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 140 bits (338), Expect = 3e-32
Identities = 69/146 (47%), Positives = 96/146 (65%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPKRL EG ALL
Sbjct: 18 PYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALL 77
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
RRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKS V
Sbjct: 78 RRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVG 137
Query: 516 KQVVNIPSFIVRLDSGKHIDFSLKSP 593
KQVV++PSF+VR++S I + +P
Sbjct: 138 KQVVDVPSFLVRVESEPLIQLADNTP 163
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 115 bits (276), Expect = 1e-24
Identities = 61/105 (58%), Positives = 75/105 (71%)
Frame = +3
Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
RP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R+FEG AL
Sbjct: 19 RPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEAL 67
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 467
LR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KS
Sbjct: 68 LRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKS 112
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 102 bits (245), Expect = 6e-21
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Frame = +3
Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-EEKDPKRLFEG-- 323
RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L + +FE
Sbjct: 16 RPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKK 75
Query: 324 NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXX 503
+ L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 76 SELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGH 134
Query: 504 XXVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 596
+ + V +P ++V I ++ KSPF
Sbjct: 135 IAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 100 bits (240), Expect = 2e-20
Identities = 65/134 (48%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Frame = +3
Query: 225 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 383
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 384 DYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVRLDSG 563
+ GL+I F E++LQTQVF+ L KS + KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 564 KHIDFSLKSPFGGG 605
KH DF GGG
Sbjct: 160 KHTDFFRHCLNGGG 173
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 100 bits (240), Expect = 2e-20
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 9/157 (5%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAL 332
PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+ + G +L
Sbjct: 16 PFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSL 73
Query: 333 LRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXX 488
LRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLAKS
Sbjct: 74 LRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLL 133
Query: 489 XXXXXXXVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 599
++ Q+V++P F+VR D I+++ S +G
Sbjct: 134 IGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 99.5 bits (237), Expect = 5e-20
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Frame = +3
Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL---FEG 323
RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+ ++ +
Sbjct: 16 RPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKK 75
Query: 324 NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXX 503
+ L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 76 DELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGH 134
Query: 504 XXVRKQVVNIPSFIVRLDSGKHIDFSLKSP 593
+ + V IP + V + I ++ SP
Sbjct: 135 IAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 96.3 bits (229), Expect = 5e-19
Identities = 55/160 (34%), Positives = 87/160 (54%)
Frame = +3
Query: 117 RRYFQRRT*HLXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 296
RR F++ P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ +
Sbjct: 5 RRRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--D 62
Query: 297 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXX 476
+ + E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++
Sbjct: 63 RTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQ 122
Query: 477 XXXXXXXXXXXVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 596
V +VV PS++V ++ I ++ SPF
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPF 162
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 95.9 bits (228), Expect = 7e-19
Identities = 58/168 (34%), Positives = 94/168 (55%)
Frame = -3
Query: 608 TTSTEWRFQREVNVLXRVQAHNK*WDVHNLLADTNMPXPDQNSGMMDGLRQASFEHLRLQ 429
+++TEWR EVNVL R Q+ ++ WDV +LL ++N+ DQ+S +++ L Q L LQ
Sbjct: 24 SSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQ 83
Query: 428 TTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXE 249
++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQ +
Sbjct: 84 SSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQ 143
Query: 248 RVFDAPYFTLVAETVLSDDLQLLVKTCLFKRTXEVSRTSLKIPTVLCC 105
++ F+LV +TV + LQ V+T F R+ SR SL + + C
Sbjct: 144 LERNSVNFSLVLQTVFTSQLQFGVQTSGFVRSL-WSRVSLGVSSWGSC 190
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 95.9 bits (228), Expect = 7e-19
Identities = 53/147 (36%), Positives = 81/147 (55%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L + R L+
Sbjct: 17 PWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLI 74
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
++L R+G++++ LD +LGL E++LERRLQT V+K GLA++ +
Sbjct: 75 QKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIG 134
Query: 516 KQVVNIPSFIVRLDSGKHIDFSLKSPF 596
+ V P +IV IDF SPF
Sbjct: 135 GRRVTSPGYIVMRGEEDLIDFYPTSPF 161
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 89.8 bits (213), Expect = 4e-17
Identities = 48/145 (33%), Positives = 80/145 (55%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K K + +L
Sbjct: 20 PYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGIL 79
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
+ ++ L+ ++ + + L RRLQT V + L+K+ V+
Sbjct: 80 WFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVK 139
Query: 516 KQVVNIPSFIVRLDSGKHIDFSLKS 590
Q+VN PSF+VR D+ I FSL S
Sbjct: 140 NQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 89.4 bits (212), Expect = 6e-17
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLEEKDPKRLFEGNAL 332
P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L D + +
Sbjct: 17 PWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQLERM 76
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S V
Sbjct: 77 IKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITV 135
Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSP 593
+ V +P +V I + SP
Sbjct: 136 NGRRVTVPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 85.8 bits (203), Expect = 7e-16
Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNA-L 332
P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 14 PWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEKERF 72
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK+ V
Sbjct: 73 LTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMV 131
Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSP 593
+VV+ PS++V+ + I+F SP
Sbjct: 132 NGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 85.4 bits (202), Expect = 9e-16
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE-----KDPKRLFE 320
P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL + +D + +
Sbjct: 17 PWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRD 76
Query: 321 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXX 500
++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A S
Sbjct: 77 AQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHG 135
Query: 501 XXXVRKQVVNIPSFIVRLDSGKHIDFSLKSP 593
+ + + +P ++V + + + SP
Sbjct: 136 HISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 83.8 bits (198), Expect = 3e-15
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE-------EKDPKRL 314
P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL E +
Sbjct: 17 PWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYA 76
Query: 315 FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXX 494
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA++
Sbjct: 77 TQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFIT 135
Query: 495 XXXXXVRKQVVNIPSFIVRLDSGKHIDFSLKSP 593
+ + IP +V + HI + SP
Sbjct: 136 HGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 82.6 bits (195), Expect = 7e-15
Identities = 49/146 (33%), Positives = 76/146 (52%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++ ++ E L
Sbjct: 17 PWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLF 74
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + V
Sbjct: 75 GILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVN 134
Query: 516 KQVVNIPSFIVRLDSGKHIDFSLKSP 593
+ +N PS++V L I + SP
Sbjct: 135 GKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 82.6 bits (195), Expect = 7e-15
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Frame = +3
Query: 159 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFEGNAL 332
+ K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 20 WNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PF 75
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKS V
Sbjct: 76 KEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAV 135
Query: 513 RKQVVNIPSFIV 548
+ V P F+V
Sbjct: 136 AGRRVTSPGFLV 147
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 81.0 bits (191), Expect = 2e-14
Identities = 53/148 (35%), Positives = 76/148 (51%)
Frame = +3
Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L ++ +R + L
Sbjct: 16 RPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVL 73
Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
LR L RIG++ K LD VL L++ D L RRLQT V K + +
Sbjct: 74 LRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITI 132
Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSPF 596
+VV IPS+ V ++ I + S F
Sbjct: 133 SDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 80.2 bits (189), Expect = 4e-14
Identities = 45/141 (31%), Positives = 75/141 (53%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R + LL
Sbjct: 17 PWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELL 74
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + +
Sbjct: 75 DHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLN 133
Query: 516 KQVVNIPSFIVRLDSGKHIDF 578
+ +N P +V ++IDF
Sbjct: 134 GKKINAPGHLVEKADEENIDF 154
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 79.8 bits (188), Expect = 5e-14
Identities = 48/141 (34%), Positives = 71/141 (50%)
Frame = +3
Query: 156 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 335
P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL G +
Sbjct: 17 PYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFV 71
Query: 336 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVR 515
RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA + V
Sbjct: 72 ARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVD 130
Query: 516 KQVVNIPSFIVRLDSGKHIDF 578
V PS+ V + + F
Sbjct: 131 GSRVTEPSYTVPVSEENTLAF 151
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 72.5 bits (170), Expect = 7e-12
Identities = 38/66 (57%), Positives = 42/66 (63%)
Frame = -1
Query: 610 GRPPPNGDFREKSMCXPESRRTINDGMFTTCLRTRICLXRIKILA*WMDFARPALNTCVC 431
GRPPP+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC
Sbjct: 53 GRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVC 112
Query: 430 RRRSKK 413
+RRSKK
Sbjct: 113 KRRSKK 118
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 71.3 bits (167), Expect = 2e-11
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +3
Query: 168 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLV 347
AR+ + +I EYGL N E+W+V+ ++R+R R LL+ + ++ R+V
Sbjct: 21 ARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDT----SDKIIARMV 76
Query: 348 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVV 527
+ G+L E L+ VL + FLERRLQT VFK GLA++ V + V
Sbjct: 77 KFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRV 135
Query: 528 NIPSFIV 548
+IP ++V
Sbjct: 136 SIPGYMV 142
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 228 VWRVKYTLARIRKAARELLTLEEKDPKRLF 317
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 52.8 bits (121), Expect = 6e-06
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 363 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 467
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKS 51
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 50.0 bits (114), Expect = 4e-05
Identities = 34/118 (28%), Positives = 53/118 (44%)
Frame = +3
Query: 195 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 374
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 375 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIV 548
KL + + F ERRL + + + S + +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 49.6 bits (113), Expect = 6e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 510 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 602
V +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 57
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 46.4 bits (105), Expect = 5e-04
Identities = 32/122 (26%), Positives = 54/122 (44%)
Frame = +3
Query: 183 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 362
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 363 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSF 542
+ L+ + F RRL T + K +A+ V VV P+F
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 543 IV 548
+V
Sbjct: 149 LV 150
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 41.1 bits (92), Expect = 0.020
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 159 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 284
+ K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 130 YGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 39.1 bits (87), Expect = 0.081
Identities = 26/123 (21%), Positives = 52/123 (42%)
Frame = +3
Query: 180 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 359
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 360 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPS 539
L K D + + RRL + + +A++ V ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 540 FIV 548
++V
Sbjct: 148 YLV 150
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 38.7 bits (86), Expect = 0.11
Identities = 25/123 (20%), Positives = 53/123 (43%)
Frame = +3
Query: 180 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 359
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 360 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPS 539
+D KQ ++ + F RR + K A+ + + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 540 FIV 548
I+
Sbjct: 147 LII 149
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 38.3 bits (85), Expect = 0.14
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = +3
Query: 195 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 374
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 375 MKLDYVLGLKIEDFLERRLQTQVFK 449
LD + L L RRL + K
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMK 116
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 37.9 bits (84), Expect = 0.19
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 534 PSFIVRLDSGKHIDFSLKSPFGGGR 608
PSF+VR+DS K D SL SP GGGR
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGR 48
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 37.5 bits (83), Expect = 0.25
Identities = 29/97 (29%), Positives = 45/97 (46%)
Frame = +3
Query: 264 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 443
K E T + K F N + ++ +I +E KL V GL + ++LERRL+ V
Sbjct: 38 KKPTEYATQLREKQKAKFIYNVMEKQFRKI--YEEAARKLG-VTGLTLIEYLERRLENVV 94
Query: 444 FKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVRL 554
++ G AK+ V + VNI SF V++
Sbjct: 95 YRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 36.3 bits (80), Expect = 0.57
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = +3
Query: 390 VLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVRLDSGKH 569
V G + LERRL V++ G + S V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 570 IDFSLKS 590
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 35.9 bits (79), Expect = 0.75
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +3
Query: 255 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ 434
R RK + + L+EK + G +L R R + + K + G + F+E RL
Sbjct: 41 RRRKQSEYGIQLQEKQKAKYTYG--ILERQFR-NIFHQASRKKG-ITGENLLKFIEARLD 96
Query: 435 TQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSF 542
V++ G+A + V Q+VN+PSF
Sbjct: 97 NTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 35.5 bits (78), Expect = 0.99
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = +3
Query: 261 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 440
RK + L L EK + G +L + R KQM + + G + LE RL
Sbjct: 21 RKMSEYGLQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNV 76
Query: 441 VFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVR 551
+F+ GLA++ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.5 bits (78), Expect = 0.99
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 531 CSQLACGHEYAXAGSKFWHDGWTSPGQL*TPASAD 427
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 0.99
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Frame = +3
Query: 171 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG--NALLRRL 344
RL EL +G+ G +R ++ L R RK + L LEEK R G RRL
Sbjct: 15 RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYGLREEQFRRL 73
Query: 345 VRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQV 524
+ +K ++V L + LE+RL VF+ G A S V +
Sbjct: 74 INKA---KKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKK 128
Query: 525 VNIPSFIVRL 554
VNI S I+++
Sbjct: 129 VNIGSQIIKV 138
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 458 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 553
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 2.3
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 162 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 341
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 33.9 bits (74), Expect = 3.0
Identities = 31/101 (30%), Positives = 42/101 (41%)
Frame = +3
Query: 252 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 431
AR R+ + L L EK R G L R+ RI EK + G + LERRL
Sbjct: 41 ARRRQVSDYGLQLLEKQKARYVYG-VLERQFRRIF---EKAQRFPGETGAYLFILLERRL 96
Query: 432 QTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVRL 554
V++ G A + V + NIPS+ VR+
Sbjct: 97 DNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYTVRV 137
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 33.1 bits (72), Expect = 5.3
Identities = 33/118 (27%), Positives = 47/118 (39%)
Frame = +3
Query: 252 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 431
AR +K + + L EK + G +L R+ EK V G + LERRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 432 QTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGG 605
VF+AG A S + + V+IPS+ ++ G I KS G
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDVISLREKSRANAG 157
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 32.3 bits (70), Expect = 9.3
Identities = 31/103 (30%), Positives = 45/103 (43%)
Frame = +3
Query: 282 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 461
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 462 KSXXXXXXXXXXXXXXVRKQVVNIPSFIVRLDSGKHIDFSLKS 590
+ + + VNIPS +RL+ G I +S
Sbjct: 107 PTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,138,515
Number of Sequences: 1657284
Number of extensions: 11809686
Number of successful extensions: 30897
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 29954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30876
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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