Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F02
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   231   8e-62
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   230   1e-61
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    40   3e-04
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.53 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.7  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  231 bits (564), Expect = 8e-62
 Identities = 108/152 (71%), Positives = 126/152 (82%)
 Frame = +3

Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
           +RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS              V
Sbjct: 77  IRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136

Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR 608
            KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGR
Sbjct: 137 GKQIVNVPSFVVRLDAQKHIDFALSSPYGGGR 168


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  230 bits (563), Expect = 1e-61
 Identities = 108/152 (71%), Positives = 126/152 (82%)
 Frame = +3

Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
           +RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKS              V
Sbjct: 77  IRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136

Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR 608
            KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGR
Sbjct: 137 GKQIVNVPSFVVRLDTQKHIDFALSSPYGGGR 168


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 49/123 (39%)
 Frame = +3

Query: 180 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 359
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 360 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXVRKQVVNIPS 539
           L  K    D      +     RRL   + K  +++               V   V+  P+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147

Query: 540 FIV 548
           ++V
Sbjct: 148 YLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 404  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 535
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 234  RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 401
            R++YT  R+R  AR+ LT        LF   + L+    + +L++KQ +   +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,553
Number of Sequences: 5004
Number of extensions: 46930
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)